BAC Information

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BAC

Clone NameMSMg01-338G12
Chromosome12 (Build37)
Map Location 54,887,121 - 54,887,701
singlet/doubletsinglet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338G12.T7 (MSMg01no338_g12.b1)MSMg01-338G12.TJ (MSMg01no338_g12.g1)
ACCAG452942AG452943
length736853
length of high quality
(start - end)
581 (68 - 648)92 (68 - 159)
definitionCHROMAT_FILE: MSMg01no338_g12.b1 PHD_FILE: MSMg01no338_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:02 2005CHROMAT_FILE: MSMg01no338_g12.g1 PHD_FILE: MSMg01no338_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCTTCATTTTACCAAATTCACATCTCCAGGGGGCCCGGCTTGAGAGCCGA
TTAGGGCGAGAGTGGAATGAGTTGTTGGGACTGTGCTGCTGCACGCACAT
GAGCTCCCGCACACCATCCTGCTACATTTTCCATGTCTGCATTCTTCTCT
GCTGCCTCCACTGAGAAATGCTCCTAACCGAACTGGTGAGGGCTACAGGG
CAGCTTGAAGGTATGCAGAGGCAACCTACACTATGGGAATCATGTCTGGC
CCAGGGATCTGTTCATATTCACAGGGCTGCTTGGCCTTCCTCTCTTCGTC
CAACTCCTCCTGTGTCTCTCAGATACAGAGAGTGCACATTCTTAGGCACT
GAACCTTCTCTGCAGGCTCTTAGCTTGGAACATCTTAGAACTAATTCATT
GCTGTGAAGGATGCCGAGTTTCCAGACTCAGCTAGGTGAGTTTGTCTGAT
TCGTAAATAAAGGTGGTACCAGTTGTCCCTGCCCAGCTGTTAGACTGGCC
CACGCATGTACCTATTCTGAGAATATTTTGGTAGCTCAGATCATTTACTT
GGCTCCTCTCTGTGAATTATTTTCTTTAAAAGGCATAAGTAAATTGATTA
ATATTCAAAGTCTCCTAGGAGGTGGTAAAAATTTGTTTTCTCCAATCTCT
TCATGGAAATTTCACAAGATTTAATAAATTACATCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCCCCTCTGTTATTTGGAATATATGAGCTAT
GCCTCTAAACCAGGTCATTAGCTTGGGCCGTGGGGATAGGTTCATCGCCT
CACCCACNGGGACTGGCTCGGCGGGTGCTCCCAGAGCTCCCTTCCCTGCC
TTCTACATTTAGAAAGCCCTCTTTGACTCAGTAGTAGGCTATGATTTAAA
ACACTGTCTGGGTGATATTCTAGTGTGANAACCTCANGNTGAGGCTGCAT
GGNAGAAGATGCGATTTNTTCANANNAAAGATTTTTTTTTTATTATTTAA
GGTGCTGAATTAACTTTGTGTTAGATGTGATTTTTTTTTCTTTTTGCATT
GTGCTTTGGGGTGTTTTCCTTCTTTTGTAAAATATTGTTTTGTTCGTCTG
GCGAGAATGTATTTTTTTTTTCTCCTTTCACTTTCCCCTTTTTTACTTAG
TTTAGTTGTTTGTCTTCTCACTTTTTTCATTTTTTTTTACGGCCTTTTAG
GGTTCTATACTAGTTTCCCCATTCTCTTCCTCAACTACTTGTTTTTTAGA
TTTTTTTCTTATTTTTGTTCTCTCTCTGTACGATATTTTGTTTATTCCGC
CTTATTTAATCTTTCTATCTTTTTTTTTTCCTTTATGTTTATCATTTCTC
CTCTTTTCTCTCCACTACTTTTTTCTCCCTCCTTCCGCTTTCTCTCCTAC
TCTTTTCTTTTTTCTCCTTTTCTTTTCTTCATATTATATTTTCCCCTCCT
NCTCTATCTCTTCTATATTCTTTTCCTTTCTTATTCTTTCTTTTATCTTC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_g12.b1 MSMg01no338_g12.b1 CHROMAT_FILE:
MSMg01no338_g12.b1 PHD_FILE: MSMg01no338_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:02 2005
         (581 letters)



>mm_chr12_54886921_54887901
          Length = 981

 Score = 1054 bits (545), Expect = 0.0
 Identities = 572/581 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacatctccagggggcccggcttgagagccgattagggcgagagtggaatgagttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacatctccagggggcccggcttgagagccgattagggcgagagtggaatgagttgttg 260

                                                                       
Query: 61  ggactgtgctgctgcacgcacatgagctcccgcacaccatcctgctacattttccatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggactgtgctgctgcacgcacatgagctcccgcacaccatcctgctacattttccgtgtc 320

                                                                       
Query: 121 tgcattcttctctgctgcctccactgagaaatgctcctaaccgaactggtgagggctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcattcttctctgctgcctccactgagaaatgctcctaaccgaactggtgagggctaca 380

                                                                       
Query: 181 gggcagcttgaaggtatgcagaggcaacctacactatgggaatcatgtctggcccaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcagcttgaaggtatgcagaggcaacctacactatgggaatcatgtctggcccaggga 440

                                                                       
Query: 241 tctgttcatattcacagggctgcttggccttcctctcttcgtccaactcctcctgtgtct 300
           ||||||||||  |||| |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 441 tctgttcataggcacaaggctgcttggcctttctctctttgtccaactcctcctgtgtct 500

                                                                       
Query: 301 ctcagatacagagagtgcacattcttaggcactgaaccttctctgcaggctcttagcttg 360
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcagatacagagaatgtacattcttaggcactgaaccttctctgcaggctcttagcttg 560

                                                                       
Query: 361 gaacatcttagaactaattcattgctgtgaaggatgccgagtttccagactcagctaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacatcttagaactaattcattgctgtgaaggatgccgagtttccagactcagctaggt 620

                                                                       
Query: 421 gagtttgtctgattcgtaaataaaggtggtaccagttgtccctgcccagctgttagactg 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcttgtctgattcgtaaataaaggtggtaccagttgtccctgcccagctgttagactg 680

                                                                       
Query: 481 gcccacgcatgtacctattctgagaatattttggtagctcagatcatttacttggctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcccacgcatgtacctattctgagaatattttggtagctcagatcatttacttggctcct 740

                                                    
Query: 541 ctctgtgaattattttctttaaaaggcataagtaaattgat 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctgtgaattattttctttaaaaggcataagtaaattgat 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)