BAC Information

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BAC

Clone NameMSMg01-338P20
Chromosome12 (Build37)
Map Location 115,288,717 - 115,382,612
singlet/doubletdoublet
Overlap geneIgh, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3
Upstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2
Downstream geneIghv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338P20.T7 (MSMg01no338_p20.b1)MSMg01-338P20.TJ (MSMg01no338_p20.g1)
ACCAG453386AG453387
length751719
length of high quality
(start - end)		591 (68 - 658)563 (75 - 637)
definitionCHROMAT_FILE: MSMg01no338_p20.b1 PHD_FILE: MSMg01no338_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:44 2005CHROMAT_FILE: MSMg01no338_p20.g1 PHD_FILE: MSMg01no338_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:44 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(115,382,238 - 115,382,612)(115,288,717 - 115,289,295)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AGCCACTGTTCTTAAGATCAGTCTGTGCCATTATAGTTAGGTAGACATCT
CTGTAGTGCACCATTTGATTATACATACACAGACATACCGACAAACACAC
ACAAACACACACACATATAATATAATAAATACAATATAATATGATAATAT
ATATGTATATGTGTATATGAATGTGTATGTAATGTTGTTGGGGTCTCTCA
CCTGCTCACCACAGGATGCCACAAGTTTGACCAAGCTTACCTCAAGCTGT
AGCCAGATGGGTGTTGATTCTTAGAACAGCACTGGGACCCCACCCAGGCC
TGGAAAATCACAGTCTGAGGCCCAGGACAGCCAAAGCTGGCTGGGGGTCC
CCAGACCTAAAGAAGGCACAGCCATTTGCTTCTCAGATTCTTGGGCTTCC
AGGTGCCACTGGAAGACATGGAAGAGATGAGGATATATGCGTATACAATT
ATTCACTTTTTGACACATTGCTTAATGAATATGAAGCAATTGCCTTCATT
GCCTCTAACTATTTTAGGACTGACATCAATTCTATTACATATTATAATAC
CAAAGCTTATTTGTCCCTTAGTTCCATAGGCTGGATAAACTACCAACAAA
AAAGTACATATACTGTGATTCATGGCTCTAGCTGCATATGTATCAGAGGA
TGGTCTAGTCAGTAATCAATGGGAGGAGAGGCATTGTTCCCTAAAAGATT
N

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAGATACTGCACAGCATAAAGACA
ATGAACCTGATGGAAACCAAGTGTGCTAAAAGAGTCAAATGAACATGTAA
GAAAGATTATAGCAACACAGGCAAATTCCTCTCCATTAACCTAAGGTCAT
CTGTAATAACAAGTAGAAAACAATATATTTCAGTATATAATTCCACAAAA
ATGGAAAAAGACCAGATGATGTATGAGGGTAGGAAGGCAAGATTGGAGGT
CAAAGTTATTTTGTTAAAAATCCCAGAATATAAATGAAAAACATGGTGTA
TATGGACATTTTAGTCACAAATATCTGAAAAAGAATCTATCTGTTGATAT
ACATCTAACCTTACACTCAAGAATTTAAGAAGAACCAAAGCATGTTACAT
ACTCACACACACACAGACAGACACACACAGACACACACACACACACACTC
ACACACACACACACACACACATACACACACACACACACACACACACACAA
ACACACACACACTCCACAAAACTCTATGCACAGAGAGCCTATATTCCATT
AAAATTGCAAAGGAACTCACCCCTGAACATTTCCTAATGTAGAGAGATAA
TGGTGTCTTAACAAAAGACTGGAGAATTTTCTAAGGAATCTAGAATGTGA
TCTAAAAATGAGCAGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_p20.b1 MSMg01no338_p20.b1 CHROMAT_FILE:
MSMg01no338_p20.b1 PHD_FILE: MSMg01no338_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:44 2005
         (591 letters)



>mm_chr12_115381622_115382612
          Length = 991

 Score =  687 bits (355), Expect = 0.0
 Identities = 370/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 217 agcttacctcaagctgtagccagatgggtgttgattcttagaacagcactgggaccccac 276
           ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||
Sbjct: 991 agcttacctcaagctgtagccagatgggtgttgagccatagaacagcactgggaccccac 932

                                                                       
Query: 277 ccaggcctggaaaatcacagtctgaggcccaggacagccaaagctggctgggggtcccca 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ccaggcctggaaaatcacagtctgaggcccaggacagccaaagctggctgggggtcccca 872

                                                                       
Query: 337 gacctaaagaaggcacagccatttgcttctcagattcttgggcttccaggtgccactgga 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gacctaaagaaggcacagccatttgcttctcagattcttgggcttccaggtgccactgga 812

                                                                       
Query: 397 agacatggaagagatgaggatatatgcgtatacaattattcactttttgacacattgctt 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 agacatggaagagatgaggatatatgcgtatacaattattcactttttgacacattgctt 752

                                                                       
Query: 457 aatgaatatgaagcaattgccttcattgcctctaactattttaggactgacatcaattct 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aatgaatatgaagcaattgccttcattgcctctaactattttaggactgacatcaattct 692

                                                                       
Query: 517 attacatattataataccaaagcttatttgtcccttagttccataggctggataaactac 576
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 691 attacatattataataccaaaacttatttgtcccttagttccataggctggataaactac 632

                          
Query: 577 caacaaaaaagtaca 591
           |||||||| ||||||
Sbjct: 631 caacaaaagagtaca 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_p20.g1 MSMg01no338_p20.g1 CHROMAT_FILE:
MSMg01no338_p20.g1 PHD_FILE: MSMg01no338_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:44 2005
         (563 letters)



>mm_chr12_115288517_115289479
          Length = 963

 Score =  934 bits (483), Expect = 0.0
 Identities = 550/579 (94%), Gaps = 16/579 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagatactgcacagcataaagacaatgaacctgatggaaaccaagtgtgctaaaagag 60
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagatactgtacaacataaagacaatgaacctgatggaaaccaagtgtgctaaaagag 260

                                                                       
Query: 61  tcaaatgaacatgtaagaaagattatagcaacacaggcaaattcctctccattaacctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaatgaacatgtaagaaagattatagcaacacaggcaaattcctctccattaacctaa 320

                                                                       
Query: 121 ggtcatctgtaataacaagtagaaaacaatatatttcagtatataattccacaaaaatgg 180
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ggtcatctgtaatagcaagtagaaaacaatatatttcagtatataatttcacaaaaatgg 380

                                                                       
Query: 181 aaaaagaccagatgatgtatgagggtaggaaggcaagattggaggtcaaagttattttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaagaccagatgatgtatgagggtaggaaggcaagattggaggtcaaagttattttgt 440

                                                                       
Query: 241 taaaaatcccagaatataaatgaaaaacatggtgtatatggacattttagtcacaaatat 300
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 441 taaaaatcccagaatataaatgaaaaacatggggtatatgggcattttagtcacaaatat 500

                                                                       
Query: 301 ctgaaaaagaatctatctgttgatatacatctaaccttacactcaagaatttaagaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaaaagaatctatctgttgatatacatctaaccttacactcaagaatttaagaagaa 560

                                                                       
Query: 361 ccaaagcatgttacatactcacacacacacagaca------gacacacacagacacacac 414
           ||||||||||||||||||||||||||||| |||||      |||||||||||||||||||
Sbjct: 561 ccaaagcatgttacatactcacacacacagagacacacacagacacacacagacacacac 620

                                                                       
Query: 415 acacacacact--cacacacacac--acacacacacatacacacacacacacacaca--c 468
           ||||||||||   |||||||||||  ||||||||||| |||||||||||||||||||  |
Sbjct: 621 acacacacacagacacacacacactcacacacacacacacacacacacacacacacagac 680

                                                                       
Query: 469 aca--cacaaacacaca--cacactccacaaaactctatgcacagagagcctatattcca 524
           |||  |||| |||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagacacacacacacatacacactccacaaaactctatgcacagagagcctatattcca 740

                                                  
Query: 525 ttaaaattgcaaaggaactcacccctgaacatttcctaa 563
           ||||||||||||||||||||| |||||||  ||||||||
Sbjct: 741 ttaaaattgcaaaggaactcaaccctgaatgtttcctaa 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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