BAC Information

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BAC

Clone NameMSMg01-339D09
Chromosome12 (Build37)
Map Location 107,139,013 - 107,139,484
singlet/doubletsinglet
Overlap genenone
Upstream gene4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
Downstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339D09.T7 (MSMg01no339_d09.b1)MSMg01-339D09.TJ (MSMg01no339_d09.g1)
ACCAG453555AG453556
length756711
length of high quality
(start - end)
428 (69 - 496)474 (44 - 517)
definitionCHROMAT_FILE: MSMg01no339_d09.b1 PHD_FILE: MSMg01no339_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:00 2005CHROMAT_FILE: MSMg01no339_d09.g1 PHD_FILE: MSMg01no339_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGATTCTCTCTTCAAGTAAGGTTGCAGACTGAAGTAGTAGG
AATTAGGAGGTCAACACATATGTGGTGGTTTGAATGAGAATGGCCCTGCA
TAGGCTCGCGTATTTGAATGCTTGGTTCCTAGCTGGTAGAACTGTTTGGG
AAGGATTAGGGGGTGTGGCTTTGTTGGAGGAGGTGTGTCACTGGGCATGC
GTGGGTTTTGAGGTTCCAGTATCTTTCTCTCCACCTCCTAGTTATGGACC
AAGTGTAGGCTGTCAGCTACTACTCCAGTGCCATGGCTGCCTGCCTATTG
CTGTGCTCCCTATCGCAGTGGACAAGGGCTTTAACAGTCTGAAACTATAA
GCCAGCCCCAATTAAATTTTTTCTTTTATCAGTTGCCACAGTCATGGTGT
CTCTTCACAGCATCATTATAACACTGACTAAGACAATATCCTCTCAGGGA
GAGGAGATCCTTCTTCCCATGTTATCAGCCTTTTAGAGGGTCTTTTTCTG
GAATGATTGTACAACGTGGGTATTTCTCCCGCTGTATTTCCCCGTGACAC
CCTCTATTCCCTACATGTTTTTGGGTTTTGGTGCCCCTCCCCCTTCTTAT
TTCCCCTCCTCTTCACGCCCCACGCCTCGTTTACCTCCCCACCCTCCTAT
TTCCCCCCTCCCCCCCTTATATTTTGTTTCTTGTCCCAGCCCACCGTTCC
TAATTG
GGTCCTACACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGGC
CCCTCTGATAAACCCATACATGGTCAGTCCATGGAATTCTTAGGGGACAG
GGGGCGGAGATGGGGGGGGGCTGGAATGCTGACCCACCATTGGCTCAGAG
ATTTCCAAGACCATGGGAATCAGTCTCAAGACAGAGAAGAGGTTGAAGGG
GCTTGAGATGAAAAACTACCAATGACTAGAAACAGTGGCCCAGTCACAAA
TGACCCAACCAGCTGAGAAAGGGTCAGCCCACTATAGCATCTGATGCCTA
TAGACAGGCAATGCCTTCCTGGATCAAATGTAGAGAACGCAGGGCTTGAA
CGAGAATGACAGAGCTAGATGACCTGTCGGGGGAATGTGTAACTATTCTA
TGTGACCATCCCGGGTGTCTTGGTGGGACAGGCCAATAAACCTCCAGGCC
CCCAGCAAGAGAATGAAGAATAGGTGTTGAAAGGAGACTTTGAGTCACCT
CACCTGCAGGGACAAAGAGAAGTCAGGGCTCAACTCCCGAAGCTAGTTTC
CTTCTTGGAATGCTCACTGTGGAAGCCACTAGCTGTCTATAACCCTGAGA
GTCTGATCCTCTTGCATCGGGGTAACCAAACTGGAAGTTTACTACTTACC
GGCTGTTGTACCCCCTCCTAACTATATGTAACCTCTCCCTTTCACTGTTC
CCGGTGGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_d09.g1 MSMg01no339_d09.g1 CHROMAT_FILE:
MSMg01no339_d09.g1 PHD_FILE: MSMg01no339_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:00 2005
         (474 letters)



>mm_chr12_107138813_107139684
          Length = 872

 Score =  862 bits (446), Expect = 0.0
 Identities = 467/474 (98%), Gaps = 2/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctggcccctctgataaacccatacatggtcagtccatggaattcttaggggacagggg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgctgggccctctgataaacccatacatggtcagtccatggaattcttaggggacagggg 613

                                                                       
Query: 61  gcggagatgggggggggctggaatgctgacccaccattggctcagagatttccaagacca 120
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 612 gcggagat-ggggggggctggaatgctgacccaccattggctcggagatttccaagacca 554

                                                                       
Query: 121 tgggaatcagtctcaagacagagaagaggttgaaggggcttgagatgaaaaactaccaat 180
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 553 tggg-atcagtctcaagacagagaagaggttgaaggggattgagatgaaaaactaccaat 495

                                                                       
Query: 181 gactagaaacagtggcccagtcacaaatgacccaaccagctgagaaagggtcagcccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gactagaaacagtggcccagtcacaaatgacccaaccagctgagaaagggtcagcccact 435

                                                                       
Query: 241 atagcatctgatgcctatagacaggcaatgccttcctggatcaaatgtagagaacgcagg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acagcatctgatgcctatagacaggcaatgccttcctggatcaaatgtagagaacgcagg 375

                                                                       
Query: 301 gcttgaacgagaatgacagagctagatgacctgtcgggggaatgtgtaactattctatgt 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 374 gcttgaacgagaatgacagagctagaagacctgtcgggggaatgtgtaactattctatgt 315

                                                                       
Query: 361 gaccatcccgggtgtcttggtgggacaggccaataaacctccaggcccccagcaagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaccatcccgggtgtcttggtgggacaggccaataaacctccaggcccccagcaagagaa 255

                                                                 
Query: 421 tgaagaataggtgttgaaaggagactttgagtcacctcacctgcagggacaaag 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgaagaataggtgttgaaaggagactttgagtcacctcacctgcagggacaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space:   399968
Effective search space used:   399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)