MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-339E17
Chromosome	12 (Build37)
Map Location	3,452,173 - 3,452,559
singlet/doublet	singlet
Overlap gene	Asxl2
Upstream gene	LOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040
Downstream gene	LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC668260 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668260
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC668262 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668262
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC668267 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC668270 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668270
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	EG668274 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668274 MGI:3644455
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100041946 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 2 Proteins

name	1700012B15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74173 MGI:1921423
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs

name	Rab10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19325 MGI:105066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif3c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16570 MGI:107979
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043040 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs

name	Asxl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75302 MGI:1922552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC627245 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:627245
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 156 ESTs, 12 Proteins pseudo : _no_value

name	Dtnb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13528 MGI:1203728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668197 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins pseudo : _no_value

name	Dnmt3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13435 MGI:1261827
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC668289 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668289
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 51 ESTs, 13 Proteins pseudo : _no_value

name	Pomc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18976 MGI:97742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030014M07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668212 MGI:2444851
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C330021A05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217378 MGI:2443036
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adcy3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104111 MGI:99675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cenpo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52504 MGI:1923800
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410017P09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69709 MGI:1916959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 33 ESTs, 2 Proteins

name	Ncoa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17977 MGI:1276523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041946 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262772 GeneID:100041946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 2 Proteins product : similar to 1700012B15Rik protein transcript_id : XM_001477246.1

name	Rab10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352796 GeneID:19325 MGI:105066
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB10, member RAS oncogene family transcript_id : NM_016676.4

name	Kif3c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781816 GeneID:16570 MGI:107979
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 3C transcript_id : NM_008445.2

name	LOC100043040 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262826 GeneID:100043040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs product : hypothetical protein LOC100043040 transcript_id : XM_001480016.1

name	Asxl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801200 GeneID:75302 MGI:1922552
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : additional sex combs like 2 (Drosophila) transcript_id : NM_172421.2

name	Dtnb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6681234 GeneID:13528 MGI:1203728
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dystrobrevin, beta transcript_id : NM_007886.1

name	Dnmt3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145580 GeneID:13435 MGI:1261827
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA methyltransferase 3A transcript_id : NM_007872.4

name	Dnmt3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110224481 GeneID:13435 MGI:1261827
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA methyltransferase 3A transcript_id : NM_153743.3

name	Pomc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142346465 GeneID:18976 MGI:97742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pro-opiomelanocortin-alpha transcript_id : NM_008895.3

name	C030014M07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126723101 GeneID:668212 MGI:2444851
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030014M07 gene transcript_id : NM_001082483.1

name	C330021A05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352689 GeneID:217378 MGI:2443036
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C330021A05 gene transcript_id : NM_153082.3

name	Adcy3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475810 GeneID:104111 MGI:99675
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate cyclase 3 transcript_id : NM_138305.2

name	Cenpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373701 GeneID:52504 MGI:1923800
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centromere protein O transcript_id : NM_134046.4

name	Ncoa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754799 GeneID:17977 MGI:1276523
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor coactivator 1 transcript_id : NM_010881.1

name	LOC100041946 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262773 GeneID:100041946
definition	codon_start : 1 product : similar to 1700012B15Rik protein protein_id : XP_001477296.1

name	Rab10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710086 CCDS:CCDS25782.1 GeneID:19325 MGI:105066
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006886 - intracellular protein transport [Evidence TAS]; GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB10, member RAS oncogene family protein_id : NP_057885.1

name	Kif3c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781817 CCDS:CCDS25783.1 GeneID:16570 MGI:107979
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA] codon_start : 1 note : N-4 kinesin product : kinesin family member 3C protein_id : NP_032471.2

name	LOC100043040 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262827 GeneID:100043040
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480066.1

name	Asxl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369555 GeneID:75302 MGI:1922552
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : polycomb group protein ASXH2 homolog protein_id : NP_766009.1

name	Dtnb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681235 GeneID:13528 MGI:1203728
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : dystrobrevin, beta protein_id : NP_031912.1

name	Dnmt3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681209 GeneID:13435 MGI:1261827
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0000791 - euchromatin [Evidence ISS]; GO:0000792 - heterochromatin [Evidence IDA]; GO:0005720 - nuclear heterochromatin [Evidence IDA]; GO:0016363 - nuclear matrix [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [Evidence ISS]; GO:0003677 - DNA binding [Evidence IDA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006306 - DNA methylation [Evidence ISS] [Evidence IDA]; GO:0006349 - imprinting [Evidence IMP] [Evidence ISS]; GO:0006346 - methylation-dependent chromatin silencing [Evidence IDA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : DNA methyltransferase 3A isoform 1 protein_id : NP_031898.1

name	Dnmt3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24371231 CCDS:CCDS25784.1 GeneID:13435 MGI:1261827
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0000791 - euchromatin [Evidence ISS]; GO:0000792 - heterochromatin [Evidence IDA]; GO:0005720 - nuclear heterochromatin [Evidence IDA]; GO:0016363 - nuclear matrix [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [Evidence ISS]; GO:0003677 - DNA binding [Evidence IDA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006306 - DNA methylation [Evidence ISS] [Evidence IDA]; GO:0006349 - imprinting [Evidence IMP] [Evidence ISS]; GO:0006346 - methylation-dependent chromatin silencing [Evidence IDA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : DNA methyltransferase 3A isoform 2 protein_id : NP_714965.1

name	Pomc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679415 CCDS:CCDS25785.1 GeneID:18976 MGI:97742
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IDA] GO_process : GO:0008217 - blood pressure regulation [Evidence IGI]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA] codon_start : 1 note : adrenal corticotropic hormone; alpha-melanocyte stimulating hormone; beta-melanocyte stimulating hormone; gamma-melanocyte stimulating hormone product : pro-opiomelanocortin-alpha protein_id : NP_032921.1

name	C030014M07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126723102 GeneID:668212 MGI:2444851
definition	codon_start : 1 product : hypothetical protein LOC668212 protein_id : NP_001075952.1

name	C330021A05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887607 CCDS:CCDS25786.1 GeneID:217378 MGI:2443036
definition	GO_function : GO:0031072 - heat shock protein binding [Evidence IEA] codon_start : 1 product : Rab-related GTP-binding protein protein_id : NP_694722.2

name	Adcy3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270241 CCDS:CCDS25787.1 GeneID:104111 MGI:99675
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0004016 - adenylate cyclase activity [Evidence TAS]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007190 - adenylate cyclase activation [Evidence TAS]; GO:0006171 - cAMP biosynthesis [Evidence TAS]; GO:0009190 - cyclic nucleotide biosynthesis [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : adenylyl cyclase 3 product : adenylate cyclase 3 protein_id : NP_612178.1

name	Cenpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29336049 CCDS:CCDS25788.1 GeneID:52504 MGI:1923800
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : centromere protein O protein_id : NP_598807.2

name	Ncoa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754800 CCDS:CCDS25789.1 GeneID:17977 MGI:1276523
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 function : transcriptional coactivator for steroid and nuclear hormone receptors note : SRC-a/NCoA-1; steroid receptor coactivator-1 product : nuclear receptor coactivator 1 protein_id : NP_035011.1

name	LOC668260 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668260
definition	number : 1 pseudo : _no_value

name	LOC668260 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668260
definition	number : 2 pseudo : _no_value

name	LOC668260 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668260
definition	number : 3 pseudo : _no_value

name	LOC668260 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668260
definition	number : 4 pseudo : _no_value

name	LOC668262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668262
definition	number : 1 pseudo : _no_value

name	LOC668267 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668267
definition	number : 1 pseudo : _no_value

name	LOC668267 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668267
definition	number : 2 pseudo : _no_value

name	LOC668267 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668267
definition	number : 3 pseudo : _no_value

name	LOC668267 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668267
definition	number : 4 pseudo : _no_value

name	LOC668267 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668267
definition	number : 5 pseudo : _no_value

name	LOC668267 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668267
definition	number : 6 pseudo : _no_value

name	EG668274 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668274
definition	number : 2 pseudo : _no_value

name	EG668274 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668274
definition	number : 1 pseudo : _no_value

name	LOC668270 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262771 GeneID:668270
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to mKIAA1116 protein pseudo : _no_value transcript_id : XR_033129.1

name	1700012B15Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262825 GeneID:74173 MGI:1921423
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : RIKEN cDNA 1700012B15 gene transcript_id : XR_035415.1

name	LOC627245 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262828 GeneID:627245
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 156 ESTs, 12 Proteins product : similar to Odc1 protein pseudo : _no_value transcript_id : XR_034503.1

name	LOC668197 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262829 GeneID:668197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins product : similar to ribosomal protein S26 pseudo : _no_value transcript_id : XR_034504.1

name	LOC668289 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262830 GeneID:668289
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 51 ESTs, 13 Proteins product : similar to peptidylprolyl isomerase H (cyclophilin H) pseudo : _no_value transcript_id : XR_034506.1

name	2410017P09Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262835 GeneID:69709 MGI:1916959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 33 ESTs, 2 Proteins product : RIKEN cDNA 2410017P09 gene transcript_id : XR_001632.2

clone name	MSMg01-528O18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-471P16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-051C02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-101M19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-359C03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-271C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520E17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-445J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132P21
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-339E17.T7 (MSMg01no339_e17.b1)	MSMg01-339E17.TJ (MSMg01no339_e17.g1)
ACC	AG453616	AG453617
length	734	766
length of high quality (start - end)	612 (43 - 654)	407 (81 - 487)
definition	CHROMAT_FILE: MSMg01no339_e17.b1 PHD_FILE: MSMg01no339_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:06 2005	CHROMAT_FILE: MSMg01no339_e17.g1 PHD_FILE: MSMg01no339_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:06 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAA TTCCTTTTTTTCCCAGATTTATTTATTTATTTTATGTATATGAGTACACT GTAGCTGTCTTCAGACATACCAGAAGAGGGTATCGGATCCCATTACCGAC AGTCAATGCTCTTAAACCCCTGAGCCATCTCTCCAGTCCTGGCCTTGAAT TCTTGATGCTTCTGCACTCCACCTCCCAAATACCATAGTTTCATGTGTGT ACTACCACACCAGCCAATAATGATATATAGACTGTTTTAAATTATGGGTT TTGCCTTTATGGCAGTTCATTGAAAACTGGCAAGATGGACCATCTAGAGA CTGCCATATCAGGGAACCATCCCATAATCAGCCTCCAAACGCTGACACCA TTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTC TTGTGAGACTACGCTGGGGCCTAGCAAATACAGAAGTGGATGCTCACAGT CAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTA CCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGA ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAG ATGGCCTAGTCAGCCATCACTGGTAAGAGAGGCACATTGGGATTGCAAAC TTTATATGCCCCAGTACAGGGGGAACGCCAGGAA	NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATACCAGCAACCACATGG TGGCTCACAACCATCTGTAATGACATCTGACACCTTCTTCTGGTGCATCT GAAGACAGCTACAGTGTACTTACATATAATAATAAATATTTAAAGGAAGG AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA GGAAGGAAGGAAGAAATGTGGGCATTAAGTTCACAGTTCCTATTATTGTG CTGATATAATACAGCCACCACTGGTAAAGAAATCACAACTTTTGAACTTA GTTTTCTCCCTTATAAAAACAGGAATAATAACCATAACTGTAGGTTTTAG TGGGGAAGATGAGTAAAGCAAAGCCATCTAAAGCAATACCCAATTTGTAA ATATGTAAATATTTTTGGCCTCTTTAAAATAAGAAGTACGGGCTAGAGAG AGGGCTCAGCAGTTAGGAACATGAACTGCTGTTCCTCCAGAAGACATGGG TTCATTCCCTCCCCCCAACAGAAGGTAACAATCCACTGGAACTCTAGCTT CAGAGGAATCCAAACCCCTCTTCGGGCTTCTCTGGATACCCCCTGAATGT GGGCACATATATTTTTCATTGCTGGCAAGGATTCCTTACACTTTAAATAA AAAAGGTTCCCAAAATTATTTTTCAATAAAAAATATACCGAGGGCCCCCC TTTCTCATCTCTTATG
quality values	Open. Hide. 8 8 8 8 8 9 15 24 33 24 19 19 24 18 22 19 27 29 28 25 29 37 37 43 28 28 24 20 20 19 23 9 9 9 11 9 7 7 8 8 8 9 14 19 32 39 39 19 12 12 19 21 25 37 37 37 37 30 19 17 12 12 10 11 9 9 10 18 19 28 34 39 50 50 50 50 53 53 53 53 53 53 53 50 50 50 57 57 57 57 57 57 57 57 42 42 33 33 33 42 34 57 57 57 68 68 68 68 68 50 42 42 37 37 42 46 50 57 57 57 57 47 47 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 50 50 50 50 50 50 68 68 57 57 57 57 57 57 57 57 57 50 50 47 47 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 59 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 59 68 59 59 59 59 59 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 52 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 44 43 31 26 24 23 18 26 27 43 44 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 57 57 57 57 59 59 59 59 59 57 57 45 57 57 57 57 57 57 57 57 59 59 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 57 59 68 68 68 59 59 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 59 59 57 59 54 59 59 57 68 68 68 68 50 57 57 57 57 57 59 59 59 59 59 59 68 59 59 59 59 59 57 57 57 48 48 54 57 57 57 57 57 57 57 57 57 59 59 59 59 59 57 57 54 59 59 59 59 59 54 54 29 34 11 11 11 34 34 43 46 47 57 57 59 59 59 59 59 59 48 48 48 57 57 57 57 59 57 57 48 48 48 48 47 47 47 47 59 59 44 41 41 44 59 59 59 47 47 47 59 59 59 48 48 48 48 43 43 39 35 35 47 47 48 48 48 43 41 40 40 39 37 37 39 36 37 41 39 39 39 39 34 37 43 41 41 41 39 39 34 34 28 28 30 30 30 37 39 34 34 28 24 29 34 32 29 27 29 32 37 37 30 25 25 34 34 37 35 31 31 27 23 18 18 16 20 28 30 35 35 31 32 41 41 34 34 23 23 18 28 23 19 24 34 34 37 37 37 37 36 43 43 43 39 34 32 28 34 34 39 39 41 47 41 41 31 36 22 22 10 8 8 8 8 8 15 10 10 10 10 12 15 15 18 24 30 30 30 30 23 7 6 6 6 7 10 11 13 12 12 10 12 12 12 19 20 25 20 10 8 8 8 9 8 11 11 16 12 11 8 8 8 11 12 23 23 23 25 25 25 15 13 13 21 18 15 14 14 17 14 10 10 10 14 13 23 15 15 12 8 8 8 8	Open. Hide. 0 0 0 3 7 7 10 10 8 8 8 3 0 3 3 0 3 27 22 28 31 36 29 37 32 33 33 32 37 32 34 39 21 17 18 9 9 9 9 9 9 9 15 9 13 13 24 21 34 37 31 31 32 30 30 30 33 33 33 59 59 59 27 22 12 10 10 12 13 16 22 25 39 39 28 29 35 29 35 24 23 23 36 47 57 57 50 48 48 53 53 43 48 42 42 42 48 48 54 57 57 57 57 48 48 47 47 47 54 48 48 47 37 37 42 42 35 37 37 42 42 39 39 35 42 37 42 46 47 47 47 57 57 57 57 57 57 57 57 48 42 42 44 44 37 43 43 47 57 57 50 50 35 50 37 43 43 43 50 43 44 31 31 21 30 18 23 23 43 43 38 38 18 18 17 32 32 38 38 43 43 52 52 52 43 50 37 43 43 50 42 41 35 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 52 43 44 62 62 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 57 57 57 57 59 57 57 57 57 57 68 68 68 68 59 59 57 57 57 59 57 57 57 57 57 57 52 52 43 43 32 27 27 23 33 33 39 44 57 57 57 59 59 57 59 59 59 59 57 57 59 59 59 52 52 57 57 59 59 59 59 68 68 68 68 57 57 54 54 54 57 57 57 57 57 57 59 59 59 68 68 68 68 59 59 54 54 54 57 57 57 57 57 44 44 57 43 43 44 46 44 57 37 37 37 39 43 43 43 43 42 39 39 42 42 37 43 57 44 44 47 44 46 44 39 36 24 32 16 16 23 44 35 54 48 48 43 43 43 43 43 59 43 42 37 35 35 42 37 43 43 43 43 48 47 59 48 57 48 48 59 59 35 35 39 39 46 39 36 25 17 16 16 16 21 37 37 39 37 37 30 30 30 25 25 23 23 28 28 19 16 9 9 9 18 12 12 18 11 11 15 19 23 31 32 17 15 15 17 19 15 12 11 11 12 17 17 19 11 11 11 12 14 11 11 11 17 12 20 21 21 16 20 20 24 29 30 25 18 16 16 11 9 10 10 10 13 16 12 12 10 9 8 9 10 10 10 8 8 9 10 13 14 14 17 16 22 18 18 9 9 9 10 10 12 9 9 8 8 8 8 8 8 11 10 10 14 14 13 13 10 12 10 7 7 8 8 8 8 8 8 8 9 9 9 11 11 8 8 8 9 9 10 8 8 8 11 8 8 8 8 8 10 10 10 8 8 8 8 8 8 8 9 8 8 8 8 6 6 6 8 8 9 9 12 10 8 8 8 8 8 9 9 9 11 6 6 6 6 8 8 9 9 9 9 9 12 10 9 9 13 13 10 10 9 9 8 8 8 8 8 8 8 10 8 8 8 8 13 16 8 8 8 8 8 10 11 12 9 9 9 10 12 11 9 9 9 9 9 9 9 9 9 9 10 10 14 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 13 10 9 9 8 8 8 8 8 8 8 8 10 10 8 8 8 8 11 13 14 13 11 10 10 9 8 8 8 8 8 10 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no339_e17.g1 MSMg01no339_e17.g1 CHROMAT_FILE:
MSMg01no339_e17.g1 PHD_FILE: MSMg01no339_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:06 2005
         (407 letters)



>mm_chr12_3451772_3452578
          Length = 807

 Score =  663 bits (343), Expect = 0.0
 Identities = 381/411 (92%), Gaps = 28/411 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataccagcaaccacatggtggctcacaaccatctgtaatgacatctgacaccttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 788 aaataccagcaaccacatggtggctcacaaccatctgtaatgacatctgacgccttcttc 729

                                                                       
Query: 61  tggtgcatctgaagacagctacagtgtacttacatataataataaatatttaaaggaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 728 tggtgcatctgaagacagctacagtgtacttacatataataataaatattta-------- 677

                                                                       
Query: 121 aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg 180
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ----------------aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg 633

                                                                       
Query: 181 aagaaatgtgggcattaagtt----cacagttcctattattgtgctgatataatacagcc 236
           ||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 632 aagaaatgtgggcgttaagtttgaccacagttcctattattgtgctgatataatacagcc 573

                                                                       
Query: 237 accactggtaaagaaatcacaacttttgaacttagttttctcccttataaaaacaggaat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 accactggtaaagaaatcacaacttttgaacttagttttctcccttataaaaacaggaat 513

                                                                       
Query: 297 aataaccataactgtaggttttagtggggaagatgagtaaagcaaagccatctaaagcaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aataaccataactgtaggttttagtggggaagatgagtaaagcaaagccatctaaagcaa 453

                                                              
Query: 357 tacccaatttgtaaatatgtaaatatttttggcctctttaaaataagaagt 407
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tacccaatttgtaaatatgtaaatatttttggcctctttaaaataagaagt 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information