NNTTATCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAACATTTCCTAAATGATATCGCCAAACCTCCAATTGTA
TGGCATACTTTTGACTATGTATCCATTTGCTCTTTCCTAAGAAGACTTGG
TAGCCTTTGTCAGGTTTGTTTACGCAGTATTGTTTGCGAAACTTCAAAAC
ATCTTGCATGCTCAATATCACATATTAGAGTGTTTGGAATTACTTGCTAT
AATATATTGGTAAACCAGGGCTCTGGATGTGGTTCACTTTGTATATTGCT
TACCCAGAAATTAGGAAGCCCCAGGGTCCAGTGTCCTGCATCACATAAAC
CAAGTATATTAGTGTACACGTGAAATTCTAGAACTCAAAAGTGGGAGAAA
GGATGATCGGGACCTTAAGACTACACTTAACTACTTAGCAAGTTTGAAGA
TAGCCTAGGCCACCACAAAACCCTGTCCCAAAAAGTAGTAAGTAAGTAAG
TTTTTGCTTTTTGGAGGACTGCAAGCAAAAAGATGAATAAATGTTAGCCT
CGTGTATGACTGTCCTTCAGATGGAGTTTGGGTTTTGGAGTTTATGAGTC
ACTGAAAAAGTCAACCGTAGACCAGTGGCCAGGTAAAGTGCACACACTTT
GTCCAGTGGATTTTGCAGCCTTTTTTCCTTTTTCTGAAAACTTCCCTCTT
TTTTTGTTGAAGGGCTCGGAACCCTCCCTTTTGTTTTTTGGGACCTTAAA
T

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATC
CAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGG
GCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGA
TTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTAT
AGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTAT
CAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGC
AGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTG
GTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTT
CCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTC
GAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGGAGGTGGTT
GGTTGTCTGGAGCTGAAGATGGTGCCTCCCAGAATCTCTGCGAATTTTCT
TGCCGTTCCAGAAACGGGTGGCTTTCTGGTTTTTCCTCCGTTCCCCGGGC
TTCTGGTCTTTTCGGGTATCCGGGGCCTAAAAAGGTCCCTCTCGTGCTTG
GGCCTTTATCCTTTTTTCTG

Query= MSMg01no339_f06.b1 MSMg01no339_f06.b1 CHROMAT_FILE:
MSMg01no339_f06.b1 PHD_FILE: MSMg01no339_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:08 2005
         (518 letters)



>mm_chr12_69836250_69837167
          Length = 918

 Score =  955 bits (494), Expect = 0.0
 Identities = 510/518 (98%), Gaps = 6/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaacatttcc---taaatgatatcgccaaacctccaattgtatggcatacttt 60
           |||||||||||||   |   |||||||||||||||||||| | |||||||||||||||||
Sbjct: 204 ggaattcaaacat---cagataaatgatatcgccaaaccttctattgtatggcatacttt 260

                                                                       
Query: 61  tgactatgtatccatttgctctttcctaagaagacttggtagcctttgtcaggtttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactatgtatccatttgctctttcctaagaagacttggtagcctttgtcaggtttgttt 320

                                                                       
Query: 121 acgcagtattgtttgcgaaacttcaaaacatcttgcatgctcaatatcacatattagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcagtattgtttgcgaaacttcaaaacatcttgcatgctcaatatcacatattagagt 380

                                                                       
Query: 181 gtttggaattacttgctataatatattggtaaaccagggctctggatgtggttcactttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttggaattacttgctataatatattggtaaaccagggctctggatgtggttcactttg 440

                                                                       
Query: 241 tatattgcttacccagaaattaggaagccccagggtccagtgtcctgcatcacataaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatattgcttacccagaaattaggaagccccagggtccagtgtcctgcatcacataaacc 500

                                                                       
Query: 301 aagtatattagtgtacacgtgaaattctagaactcaaaagtgggagaaaggatgatcggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtatattagtgtacacgtgaaattctagaactcaaaagtgggagaaaggatgatcggg 560

                                                                       
Query: 361 accttaagactacacttaactacttagcaagtttgaagatagcctaggccaccacaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accttaagactacacttaactacttagcaagtttgaagatagcctaggccaccacaaaac 620

                                                                       
Query: 421 cctgtcccaaaaagtagtaagtaagtaagtttttgctttttggaggactgcaagcaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgtcccaaaaagtagtaagtaagtaagtttttgctttttggaggactgcaagcaaaaa 680

                                                 
Query: 481 gatgaataaatgttagcctcgtgtatgactgtccttca 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatgaataaatgttagcctcgtgtatgactgtccttca 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)