CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGCTTACCCGTTCTATCTTCAGCATCAAAAGAAAAAAAAAAAAA
AGAAAGCATTAGGTAGGCATAGTTCTACACACCTTTAATCCTAGTCCCTG
GGAGGCAGAGCTGGGATTCTGAGGTTTTGAGGCCAGCCTGGTCTCCAGAG
TGCAGTCAGTGCTGTAGAGAGTGACCTGACCCCAACAAGCAGGCGTGTAT
ATGCACGGATGAGTACATGTGTATGTGCATGACCTTAGTTTTAGAATTCT
GATAGACATTAGAACCATTGGATTATTTTGGATTTTAAAGACTTAAGAAA
TTTAACTTTATTCGTTATCATATTTCTGATATTTTTGAAATACTTATGAC
ATTGTTGGAGTGTGTTCTAGTTACATTTTTGCCTGTTATAAAATATTCTG
ACCAAAAAGCAATTTTGGGAAGGAAAGGACTTATCTGGCTTATGTTTCTA
AGTTTGTCATTATCGAGCCAAATGCCAATTTAAGGAGCATGGAGCAGAAA
CTTGGGAGAAATGCTGGTCCTTGGCTCACTCTCGGGTTCCTGATTGCTAG
CTTTCTCATACGGCCCAGGACCGTCTGTGGAGGGATGGTGCTGTCGTTTA
GGATTGGGCCTTCCTGTATTATTTAACCGTCAAGGTAACCCCCACTGATA
TGCCCTTAGGGAGATCCCTCTAGTGAGATTCTCGGGTGA

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTATTTCTTTGGAAAGTAGGG
TGATATAAGGAAGTGAGTTATCATGCCACATTCAAACTTATTTTTTTTTT
GTTTTTTGTTTTTTTTTTCATTTTTTATTAGGTATTTAGCTCATTTACAT
TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT
GCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCAT
ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG
GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG
TTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCC
TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT
AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCT
CACAAGAGACAGCTACTTCTGGGTCCTTTTCATAAAACCTTGCTAGTGTA
TGTAATGGTGTCCACGTTTGCATGCTGATTATGGGTTGAAACCCTGGAAA
TTGCAATCTCTACTCGAATCATCCTTTTTTTTTAACTCTCTAATTTAGTA
ATCCCTTCCAGGGCTTTTATGCCCCCAACTCTACATAAGGCCACTTAGN

Query= MSMg01no339_g09.b1 MSMg01no339_g09.b1 CHROMAT_FILE:
MSMg01no339_g09.b1 PHD_FILE: MSMg01no339_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:13 2005
         (563 letters)



>mm_chr12_99483443_99484405
          Length = 963

 Score = 1009 bits (522), Expect = 0.0
 Identities = 552/562 (98%), Gaps = 3/562 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgcttacccgttctatcttcagcatcaaaag-aaaaaaaaaaaaaagaaagc 62
           |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 768 ggaattcatgcttactagttctatcttcagcatcaaaagaaaaaaaaaaaaaaagaaagc 709

                                                                       
Query: 63  attaggtaggcatagttctacacacctttaatcctagtccctgggaggcagagctgggat 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 708 attaggtaggcatagttctacacacctttaattctagtccctgggaggcagagctgggat 649

                                                                       
Query: 123 tctgaggttttgaggccagcctggtctccagagtgcagtcagtgctgtagagagtgacct 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 648 tctgaggttttgaggccagcctggtctccagagtgcagtcagtgctgtagagagcgacct 589

                                                                       
Query: 183 gaccccaacaagc-aggcgtgtatatgcacggatgagtacatgtgtatgtgcatgacctt 241
           ||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 588 gaccccaacaagcta-gcgtgtatatgcactgatgagtacatgtgtatgtgcacgacctt 530

                                                                       
Query: 242 agttttagaattctgatagacattagaaccattggattattttggattttaaagacttaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agttttagaattctgatagacattagaaccattggattattttggattttaaagacttaa 470

                                                                       
Query: 302 gaaatttaactttattcgttatcatatttctgatatttttgaaatacttatgacattgtt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaaatttaactttattcgttatcatatttctgatatttttgaaatacttatgacattgtt 410

                                                                       
Query: 362 ggagtgtgttctagttacatttttgcctgttataaaatattctgaccaaaaagcaatttt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggagtgtgttctagttacatttttgcctgttataaaatattctgaccaaaaagcaatttt 350

                                                                       
Query: 422 gggaaggaaaggacttatctggcttatgtttctaagtttgtcattatcgagccaaatgcc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gggaaggaaaggacttatctggcttatgtttctaagtttgtcattatcgagccaaatgcc 290

                                                                       
Query: 482 aatttaaggagcatggagcagaaacttgggagaaatgctggtccttggctcactctcggg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aatttaaggagcatggagcagaaacttgggagaaatgctggtccttggctcactctcggg 230

                                 
Query: 542 ttcctgattgctagctttctca 563
           ||||||||||||| ||||||||
Sbjct: 229 ttcctgattgctacctttctca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)