BAC Information

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BAC

Clone NameMSMg01-340G21
Chromosome12 (Build37)
Map Location 28,508,883 - 28,509,371
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340G21.T7 (MSMg01no340_g21.b1)MSMg01-340G21.TJ (MSMg01no340_g21.g1)
ACCAG454471AG454472
length723751
length of high quality
(start - end)		493 (47 - 539)443 (80 - 522)
definitionCHROMAT_FILE: MSMg01no340_g21.b1 PHD_FILE: MSMg01no340_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:26 2005CHROMAT_FILE: MSMg01no340_g21.g1 PHD_FILE: MSMg01no340_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTGCCTTATGCTTCCAGATCACAGTTCATGACTGAGGGAAAT
CAGAACAGGAATTCAAGCAGGAACTGAAGCAGTGAGCGTGAGGGGACTCT
TGCTGGTTCATTCCCAGGCTTGTGTTCAGTTATCTTTCTTATGCAGACCA
CCTGCCCAAGAAACAATGCTATCCACAGTGGGCTCACATCAATCAGGAGT
CAAGTCAGGCCAGCCTTCAGTTGAGACTCCCTTTTCAGGTGACTCTACAC
TGTGTGAGATTGACAAGGTTAAGTAGGGCACTTTGTTTCTACTGATAGGT
GCTGCTTAGGTGGTGGAGTTACTGCTGTGAAGTTAATACTAGCTAAGGTC
ACCTGGGAAGAGAGAATCTCACCTGAGAAAATGCCTATATCAGGTTGGTC
TGTCAACAAGACTGAAGGGTATTTTCTTGATTATCCATTAGTGTGGGAAG
GCCTGGCCTACTGTGGTCAGTGTCACCTTTGAACAGTTGGTCCTGGGTGA
GCAGACTCAGCAATCCATGGGGAGTAAGTCAGTAAGCTGGGTCCCCACAT
GACCTCTGCTTCAATTTCTGCCTCTATGTTCCTGCCTTTCTTGAATTCAA
CATGACCTCCCTCTTGATGGACTGTAATTGGNACATGTAAGCTCCATAAA
ATTTTACTCCTAAAGTTACAAAA

NNNCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCA
TTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTAGGACAGGTTAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCC
TTATAGAATCATTGCAATTTTATGAGGTCCCATTTGTGGATTCTCGATCT
TACAGCACAAGGCATTGCTGTTCTGTTAGTCTATGTCTTTTAATTGGGGA
ATTTAGTCCATTGATATTAAGAGATATTAAGGAAAGTAATTGTTACTTCC
TATTATTTTTGTTGTTAGAGTTGGCATTCTGTTCTTGTGGCTGTCTTCTT
TTAGGTTTATTGAAGGATTACTTTCTTGCTTTTTCTAGGGTGTAGTTTCC
ATCCTTGTTTTTTTTTTTTCCTGTTATTATCGTTTGAAGGGCTGGATTTG
TGGAAAGATATTTATGTGAATTTGGTTTTGTCATGGAATACTTTGGGTTC
TCCATCTATGGGAATTGAGAGTTTGCTTGGGGATAAAACCCCGGGCTGGG
ATTTGGGTTCTCCTTAAGGCGGAAAAAACCTGGCCCGGAATTTTTGGGTT
TTCAAAACCCCGGGGGAAGGGGGGGGGAAATTAAAAAAAGCGGGCCTTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_g21.b1 MSMg01no340_g21.b1 CHROMAT_FILE:
MSMg01no340_g21.b1 PHD_FILE: MSMg01no340_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
         (493 letters)



>mm_chr12_28508639_28509531
          Length = 893

 Score =  946 bits (489), Expect = 0.0
 Identities = 489/489 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgccttatgcttccagatcacagttcatgactgagggaaatcagaacagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattcatttgccttatgcttccagatcacagttcatgactgagggaaatcagaacagga 674

                                                                       
Query: 65  attcaagcaggaactgaagcagtgagcgtgaggggactcttgctggttcattcccaggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 attcaagcaggaactgaagcagtgagcgtgaggggactcttgctggttcattcccaggct 614

                                                                       
Query: 125 tgtgttcagttatctttcttatgcagaccacctgcccaagaaacaatgctatccacagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgtgttcagttatctttcttatgcagaccacctgcccaagaaacaatgctatccacagtg 554

                                                                       
Query: 185 ggctcacatcaatcaggagtcaagtcaggccagccttcagttgagactcccttttcaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggctcacatcaatcaggagtcaagtcaggccagccttcagttgagactcccttttcaggt 494

                                                                       
Query: 245 gactctacactgtgtgagattgacaaggttaagtagggcactttgtttctactgataggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gactctacactgtgtgagattgacaaggttaagtagggcactttgtttctactgataggt 434

                                                                       
Query: 305 gctgcttaggtggtggagttactgctgtgaagttaatactagctaaggtcacctgggaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gctgcttaggtggtggagttactgctgtgaagttaatactagctaaggtcacctgggaag 374

                                                                       
Query: 365 agagaatctcacctgagaaaatgcctatatcaggttggtctgtcaacaagactgaagggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agagaatctcacctgagaaaatgcctatatcaggttggtctgtcaacaagactgaagggt 314

                                                                       
Query: 425 attttcttgattatccattagtgtgggaaggcctggcctactgtggtcagtgtcaccttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 attttcttgattatccattagtgtgggaaggcctggcctactgtggtcagtgtcaccttt 254

                    
Query: 485 gaacagttg 493
           |||||||||
Sbjct: 253 gaacagttg 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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