BAC Information

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BAC

Clone NameMSMg01-340H04
Chromosome12 (Build37)
Map Location 115,499,303 - 115,499,651
singlet/doubletsinglet
Overlap geneIgh
Upstream geneGm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833
Downstream geneEG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340H04.T7 (MSMg01no340_h04.b1)MSMg01-340H04.TJ (MSMg01no340_h04.g1)
ACCAG454485AG454486
length735740
length of high quality
(start - end)
657 (48 - 704)561 (77 - 637)
definitionCHROMAT_FILE: MSMg01no340_h04.b1 PHD_FILE: MSMg01no340_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:28 2005CHROMAT_FILE: MSMg01no340_h04.g1 PHD_FILE: MSMg01no340_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAATCCTGCTCTCACCTATTCACAGTTCATCTGGGAGAAAAG
TGAAACAGAGGTTCATTAAAGTTTTAAAATTTGTTCTGCAATGTATTCCA
TCCTGATTGAAGTTTCCCATCTCTGCCCTTCATGTGTATCTCCCCCACTT
TCCCTTTGTCCCAGGATCACCTCTAATCTCTCCTCAGAAAAGAACAAGCA
TGGCTAGGACATCAACCGAACACTGCATGACAAACTAGTATAAGATCAGG
CAAATACAATGACATCAAGGCTGGACATGGTGAACCAACAGGAAAAATAT
GGTGCAACAAACAAACTAACAAAAGAATCAAGAAACATCTCATGTTTACT
GTTAGGAATCCCATAAGAACAGTAAGCTAGTCAGCTATAACATTTAAGCA
GGGACCAAGGTTAAAACCCTACAGGTTCCCTGATTTCTGGTAGCCCATTG
ATTCTGTGACTCATGTTCTTATGGTGTGTCTGACTCCTCTGGACCTCTAC
ATGCTGTCTTCTGTAGAATTGCCTGTGTTCTAACTAAGGTTTGAGTGTTA
GGTTGTTTATCTGTTTCCATTAGTAGCACCTAATGTCTGTATGGTCTCTT
AGATGAGAGTTTTGCTAGGCTTTGTTCACAACAAATACTGCAAGCAGGAC
AAATTCCAGACTGAAAGNTTTGTGTCTGAGNTTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTATTCAGGACAAGTGAAAAT
CATGAAGTTATCAACAAGTAAGAAATAGTGCACTCTGAGAATGGTGTAAA
TCATTTCAAGTCTCAAGCTTCCCTTCATTGACATATTTTGTCCAACAGAG
ACACACTCCCTAATTCTTCTAAAAGTATTTTTTTTTAATTTTTATACTAT
TTCTTTTCGGGAAATCGTCTATACCCTCTCCCCATTCCCCTGCTCCCCAA
CCCACCTACTCCTGCTTCCTGCCCCTGTCATTCCCCTATATTGGAGAATA
TAATCTTCGTAAGACCAAGGAACTCTCCTCCCATTGATGGCCAACTAGGC
CATCCTCTGCTACATATGCAGCTACAGATACAAGCTCCGGGACGGGGGGG
GGGTTACTGTTTAGTTCGTATTGTTCCTCCTATAGGGCTGCAGACCCCTT
TAGCTCCTTGGGTACTTTCTCTAGATCCTTCACTAGGGACCCTGTGTTCC
ATCTTATAGATGACTGTGAGCATCCACTTCTATTTGCCAAGCACTGGCTT
AGCCTCACAGGAGATAGCTACTTCAGGTTCCTATCAAAAAATCTTGTTGN
CATAAGCAATAGTGTCTGTGTTTGGTGGTTGTTTAATGGATGGAACCCAG
GGTGGGACAGTCTCTGGATGGTCATTCCTTCAGACTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_h04.g1 MSMg01no340_h04.g1 CHROMAT_FILE:
MSMg01no340_h04.g1 PHD_FILE: MSMg01no340_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:28 2005
         (561 letters)



>mm_chr12_115499303_115500263
          Length = 961

 Score =  605 bits (313), Expect = e-177
 Identities = 340/349 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttattcaggacaagtgaaaatcatgaagttatcaacaagtaagaaatagtgcactct 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 349 aggttattcaggacaagtgaaaatcataaagttatcaacaagtaagaaatagtgcactct 290

                                                                       
Query: 61  gagaatggtgtaaatcatttcaagtctcaagcttcccttcattgacatattttgtccaac 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 gagaatggtgtaaatcatttcaagtctcaagcttcccttcattaacatattttgtccaac 230

                                                                       
Query: 121 agagacacactccctaattcttctaaaagtatttttttttaatttttatactatttcttt 180
           ||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||
Sbjct: 229 agagacacactccctaattcttctaaaagtaatttttaaaaatttttatactatttcttt 170

                                                                       
Query: 181 tcgggaaatcgtctataccctctccccattcccctgctccccaacccacctactcctgct 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 169 tcgggaaatcgtctataccctccccccattcccctgctccccaacccacctactcctgct 110

                                                                       
Query: 241 tcctgcccctgtcattcccctatattggagaatataatcttcgtaagaccaaggaactct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 109 tcctgcccctgtcattcccctatattggagaatataatcttcgtaagaccaagggactct 50

                                                            
Query: 301 cctcccattgatggccaactaggccatcctctgctacatatgcagctac 349
           |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 49  cctcccattgatggccaactaggccatcttctgctacatatgcagctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)