NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGATCCTACTACAGATGGATGTGAGCCACCACATGGTTGCT
GGGAATTGAACTCATGACCTCTGGAAGAGCAGCCAATGCTCTTGCCTGCT
GAGCCATCTTTCTGGCCCTTTTTTCTTCCTTTTTTTGTTTGTTTGTATTT
TGTTGTGTTTTTTTTTTTGGTTTTTGTTTGTTTTTTTTCAAGACAGGGTT
TCTCTGTGTAACTCTGGCTGTCTTAGAACTCGATTTGTAGACCAGGCTGC
CCTCAAACTCACATAGATTCACCTGCCTCTGCCTTGTGAGTGCTGGGATT
AAAGGCATGTCATCTCACCACCTTCTGGGTTACCGTTTGTACTTTCAAAG
ATGAGATGGAGGATGTTCTAGGCCATAAGACCAACACAGGTCAGTGAAGC
TGGGGTTTGATCTTCATCATCCAATACCAGATCTTAAGTGTTAATGTCAA
GTTTATTTAAAGAGTTAAGAGTAGCACAGAAGACATAACTAAGTAGGTAC
TATGATTTGAAGGCTTGTCCCCTGCAAGGTCTCTACAGTTTTTACTGTTC
TTGTGATGGNGTTGGAAAATGGGATCTTTAAGAGATGTGTAGTCATGAGA
AGATAATCTCATGTCAAGAGAAATAATTTGTTACCAAAAATGTGGGGGAG
CCTCCTCTTCCTCTGGGTCTCTTCTTCTTGTGGGATAAACAAG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGAGATCCAGATTCTCAAT
TAGTGATCAATGAGGTAGGGCCCAGCCCATTGTGGACAATGCCATCCCTG
GGCAGGTACTTTTTAAATTAATTTGGTTCATTGGTCATGTCTGGTCTCAG
GCTCTATGTGTAGCCCAGGAAGGCCTTGAACTTCTGACTCCCATGAATCC
ATTTCCCAAGTGTTGGAAGTATAGGCATACATCCCCATGTTCGGTTCTAT
AAGAAAGCAAACCAGGAAAGCAAGCCAATGAGCAGCACCACTGCCGAGCT
TCTGCATCAGCTCCTGCCTCCTGGATCCTGTCCTGTTTGAATTCCTGTCC
TACCTTCTTTTGGTGATGGACAGCAATGTGGAAGTGTAAGCTGAAAGCAT
CCTTTCCTTCCCAACTTGCTTTTGGGTCATGGAGTTTTCTTCGCAGCAAT
AGAAACCCAAACTAAGCTATCTTGTAATATAGTATCTTCACATAGTGTAT
TCGTGTGAATTGCATGTATTATGTGTTATATGAATTATATATATGTGTGT
GGNTATATATATATGTATATATGNNNNNNNNNNNNNNNTNNTTTNTTTTT
TTTTATTTTTTTTTTTTTTTTTATTTTATTTTTATTATTTATTATATATA
TAATTTTTAATTTTTTNNATTATTTTTAATTTTTATTTATTNTTTTAAN

Query= MSMg01no340_i20.b1 MSMg01no340_i20.b1 CHROMAT_FILE:
MSMg01no340_i20.b1 PHD_FILE: MSMg01no340_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:35 2005
         (550 letters)



>mm_chr12_12861589_12862538
          Length = 950

 Score =  719 bits (372), Expect = 0.0
 Identities = 426/449 (94%), Gaps = 10/449 (2%)
 Strand = Plus / Minus

                                                                       
Query: 102 tttcttcctttttttgtttgtttgtattttgttgtgttttt---ttttttggtttttgtt 158
           ||||||||||||    |||||||||||||||||||||||||   |||||||   ||||||
Sbjct: 950 tttcttcctttt----tttgtttgtattttgttgtgttttttggttttttg---tttgtt 898

                                                                       
Query: 159 tgttttttttcaagacagggtttctctgtgtaactctggctgtcttagaactcgatttgt 218
           || |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct: 897 tggtttttttcaagacaggatttctctgtgtaaccctggctgtcttggaactcgatttgt 838

                                                                       
Query: 219 agaccaggctgccctcaaactcacatagattcacctgcctctgccttgtgagtgctggga 278
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 837 agaccaggctgccctcaaactcacatagattcacctgcctctgcctcgtgagtgctggga 778

                                                                       
Query: 279 ttaaaggcatgtcatctcaccaccttctgggttaccgtttgtactttcaaagatgagatg 338
           |||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 777 ttaaaggtgtgtcagctcaccaccttctgggttaccatttgtactttcaaagatgagatg 718

                                                                       
Query: 339 gaggatgttctaggccataagaccaacacaggtcagtgaagctggggtttgatcttcatc 398
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 717 gaggatgttctaggccataagaccaacacaggtcagtgaagccggggtttgatcttcatc 658

                                                                       
Query: 399 atccaataccagatcttaagtgttaatgtcaagtttatttaaagagttaagagtagcaca 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 atccaataccagatcttaagtgttaatgtcaagtttatttaaagagttaagagtagcaca 598

                                                                       
Query: 459 gaagacataactaagtaggtactatgatttgaaggcttgtcccctgcaaggtctctacag 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 597 gaagacataactaagtaggtactatgatttgaaggcttgtcccctgcaaggtcactacag 538

                                        
Query: 519 tttttactgttcttgtgatggngttggaa 547
           | ||||||||||||||||||| |||||||
Sbjct: 537 tctttactgttcttgtgatggtgttggaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)