BAC Information

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BAC

Clone NameMSMg01-340J14
Chromosome12 (Build37)
Map Location 94,054,341 - 94,237,131
singlet/doubletdoublet
Overlap genenone
Upstream geneSel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream gene2610022K04Rik-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340J14.T7 (MSMg01no340_j14.b1)MSMg01-340J14.TJ (MSMg01no340_j14.g1)
ACCAG454598AG454599
length725728
length of high quality
(start - end)		670 (47 - 716)643 (79 - 721)
definitionCHROMAT_FILE: MSMg01no340_j14.b1 PHD_FILE: MSMg01no340_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:38 2005CHROMAT_FILE: MSMg01no340_j14.g1 PHD_FILE: MSMg01no340_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,054,341 - 94,055,007)(94,236,489 - 94,237,131)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTGTAAATTATCTTTTTCTTTTTCTCTGTCCTTAATTTGGTAG
TTTAATTTCACAGCATTATATTTGCATTTTGTTTTGTAACAAAGAGCACA
TTTGCTACAGCAATGATTATGAAATAAAGCTTACCTATCTTGAAAACACA
GAAAACAAAGGAGAGCATTAAACTCTACTTACATTTAAACTTGCCACCTG
GGCATGGGAGTTTCAAACAGTCTTGCTCATCTTCTACCACCATTATCTGA
AATACAGTGTTCTGTATGTGTTCACTCTTTTATCAAGCATGGTATTGTGC
ATGTATCAAGAACTCAAAATTATAGTGTAAATAGAAGACAATAAAGTCCA
TTTCCCTGCCACTTTCCAGATATTTTCTATATCACTGACACTGTTTTGTT
TCAATAGCGTGATAGATGTCTAACATCTTTTTCTCTCTTGCTATTATTTC
TTATAACTAATACCCTCATTTCAATTTTCTCATGTGAATATAACAGATGG
TGTTTATTTTGAATCATTTAGATGACTTAAAAATTACTCATTTATACTAT
AAGATTTTCAGATAGTTTAGATGGAAATTGCTACTTACTGATCTTCTTAA
ATCTCTACTCAAACTGTCCCAATGTAGTAGCATGGTAACCAGCTGTTGAT
CTGTCATGGACCAAGACTCCCCCCN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAGCTTTGTAAGGATAAT
CCTTCCGAGGCTGACCTGTAGGCTTTCAAGCACTAAGGAGCATGATGGAT
TCAACCCTGATAATTAAACATATAAAGTAATCAAACAAAGAAAAACCATT
CCCAATAAGTTTGAACATAAAGATCAATATTCTTACTACTTCCAATCCTC
ACACATTTCCCCTTTTGTGTTATAAGCACACTGCCTCCTAGAGATTATTG
GAGAAACGATAAGATTATGAAACCCTTAATTAAGGCCCATTGACAAAGTA
GCTCAAGAAATGAAAGGTTAAGTTTAATTTCTCCTGTTATGCAAGCTACT
GAAGAAAGAAAGGAACATGCATATTTTGTTGCTTTAAATTAATTGAATAT
GGAGACGACACTGCTGGGATGAGTTTGTGGGGCAGTGAGCAATTAGGTGG
TGATGTGATGGTAGAGAACGAAGCAAGAAAATGAGTAAATTGGTGGAGAG
ATAAAAGACAAAGAGAAGCTGAGTGGTTTGAGCACTGTGAAGAAAGGCTG
ACCTCAGGATGTAATGGCAGTTGCTGTTCATGCTCTTTAGGAAATGGTGA
GTTGCACTATTCATCAATAGAGTCAGTGGCATAGCAAATGGCAGTGGGCT
TGTGTCTTCTTGCTTTGAGAGAGTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_j14.b1 MSMg01no340_j14.b1 CHROMAT_FILE:
MSMg01no340_j14.b1 PHD_FILE: MSMg01no340_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:38 2005
         (670 letters)



>mm_chr12_94054138_94055207
          Length = 1070

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgtaaattatctttttctttttctctgtccttaatttggtagtttaatttc 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattccttgtaaattatctttttctttttctctgtctttaatttggtagtttaatttc 263

                                                                       
Query: 64  acagcattatatttgcattttgttttgtaacaaagagcacatttgctacagcaatgatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagcattatatttgcattttgttttgtaacaaagagcacatttgctacagcaatgatta 323

                                                                       
Query: 124 tgaaataaagcttacctatcttgaaaacacagaaaacaaaggagagcattaaactctact 183
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaaataaagcttacctatcctgaaaacacagaaaacaaaggagagcattaaactctact 383

                                                                       
Query: 184 tacatttaaacttgccacctgggcatgggagtttcaaacagtcttgctcatcttctacca 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 tacatttaaacttgccacctgggcatgggagtttcaaacagtcttactcatcttctacca 443

                                                                       
Query: 244 ccattatctgaaatacagtgttctgtatgtgttcactcttttatcaagcatggtattgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccattatctgaaatacagtgttctgtatgtgttcactcttttatcaagcatggtattgtg 503

                                                                       
Query: 304 catgtatcaagaactcaaaattatagtgtaaatagaagacaataaagtccatttccctgc 363
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catgtattaagaactcaaaattatagtgtaaatagaagacaataaagtccatttccctgc 563

                                                                       
Query: 364 cactttccagatattttctatatcactgacactgttttgtttcaatagcgtgatagatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cactttccagatattttctatatcactgacactgttttgtttcaatagcgtgatagatgt 623

                                                                       
Query: 424 ctaacatctttttctctcttgctattatttcttataactaataccctcatttcaattttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 624 ctaacatctttttctctcttgctattatttcttataactaataccctaatttcaattttc 683

                                                                       
Query: 484 tcatgtgaatataacagatggtgtttattttgaatcatttagatgacttaaaaattactc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatgtgaatataacagatggtgtttattttgaatcatttagatgacttaaaaattactc 743

                                                                       
Query: 544 atttatactataagattttcagatagtttagatggaaattgctacttactgatcttctta 603
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atttatactgtaagattttcagatagtttagatggaaattgctacttactgatcttctta 803

                                                                       
Query: 604 aatctctactcaaactgtcccaatgtagtagcatggtaaccagctgttgatctgtcatgg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aatctctactcaaactgtcccaatgtagtagcatggtaaccagctgttgatctgtcatgg 863

                  
Query: 664 accaaga 670
           |||||||
Sbjct: 864 accaaga 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_j14.g1 MSMg01no340_j14.g1 CHROMAT_FILE:
MSMg01no340_j14.g1 PHD_FILE: MSMg01no340_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:38 2005
         (643 letters)



>mm_chr12_94236483_94237525
          Length = 1043

 Score = 1220 bits (631), Expect = 0.0
 Identities = 640/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaagctttgtaaggataatccttccgaggctgacctgtaggctttcaagcactaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ataaaagctttgtaaggataatccttccgaggctgacctgtaggctttcaagcactaagg 590

                                                                       
Query: 61  agcatgatggattcaaccctgataattaaacatataaagtaatcaaacaaagaaaaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agcatgatggattcaaccctgataattaaacatataaagtaatcaaacaaagaaaaacca 530

                                                                       
Query: 121 ttcccaataagtttgaacataaagatcaatattcttactacttccaatcctcacacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttcccaataagtttgaacataaagatcaatattcttactacttccaatcctcacacattt 470

                                                                       
Query: 181 ccccttttgtgttataagcacactgcctcctagagattattggagaaacgataagattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 469 ccccttttgtgttataagcacactgcctcctagagattattggagaaacgataagatcat 410

                                                                       
Query: 241 gaaacccttaattaaggcccattgacaaagtagctcaagaaatgaaaggttaagtttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaaacccttaattaaggcccattgacaaagtagctcaagaaatgaaaggttaagtttaat 350

                                                                       
Query: 301 ttctcctgttatgcaagctactgaagaaagaaaggaacatgcatattttgttgctttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttctcctgttatgcaagctactgaagaaagaaaggaacatgcatattttgttgctttaaa 290

                                                                       
Query: 361 ttaattgaatatggagacgacactgctgggatgagtttgtggggcagtgagcaattaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttaattgaatatggagacgacactgctgggatgagtttgtggggcagtgagcaattaggt 230

                                                                       
Query: 421 ggtgatgtgatggtagagaacgaagcaagaaaatgagtaaattggtggagagataaaaga 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ggtgatgtgatggtagagaatgaagcaagaaaatgagtaaattggtggagagataaaaga 170

                                                                       
Query: 481 caaagagaagctgagtggtttgagcactgtgaagaaaggctgacctcaggatgtaatggc 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 169 caaagagaagctgagtggtttgagcactgtgaagataggctgacctcaggatgtaatggc 110

                                                                       
Query: 541 agttgctgttcatgctctttaggaaatggtgagttgcactattcatcaatagagtcagtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agttgctgttcatgctctttaggaaatggtgagttgcactattcatcaatagagtcagtg 50

                                                      
Query: 601 gcatagcaaatggcagtgggcttgtgtcttcttgctttgagag 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  gcatagcaaatggcagtgggcttgtgtcttcttgctttgagag 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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