BAC Information

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BAC

Clone NameMSMg01-341D10
Chromosome12 (Build37)
Map Location 28,627,476 - 28,676,397
singlet/doubletdoublet
Overlap geneLOC669327
Upstream geneSox11, LOC100043009
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D10.T7 (MSMg01no341_d10.b1)MSMg01-341D10.TJ (MSMg01no341_d10.g1)
ACCAG455065AG455066
length745846
length of high quality
(start - end)		513 (43 - 555)107 (73 - 179)
definitionCHROMAT_FILE: MSMg01no341_d10.b1 PHD_FILE: MSMg01no341_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:24 2005CHROMAT_FILE: MSMg01no341_d10.g1 PHD_FILE: MSMg01no341_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,627,476 - 28,627,984)(28,676,291 - 28,676,397)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTCCATTTATTTCTCCTATCAACATCCATTATGGTGATCAAGGCTC
AGACGTGCACAGCTCCTTCAAAAACAGCTGGGCCACTAGAAGAGGTGATG
ATCTCTTGTTACAAATGTGCATTTTCAAAGACCACAACTCAACATGAAGT
TACTTGATAGCCACTTTGTGAGGTCATCTGTTGCTATTTCTGTGAATGAC
TGGTAGAATCGTTTCTCAGATTTTGAATTGTCATCTTCTGGTGGAGCTCA
GAGGTGCTTCTCCAAAGTAGGTCCTAGAGACCTGCTTGGAAGTATATTCT
GATAGCAGGTTTCCAACCCCTATATGCACTTCAGGTAACAAGTTCTAAGC
CATCTTTGCCTACTTACTATAATTAGCACAAATTGGCATTTGTGTATGTC
CAAGCCTTATTCTAAATTCTGTACTTGTGCTTATGAGATTTTTGTCAATT
TGATACAGGCTAGAGTTGTTTGGGAAGAGGGGCTCTCACTTGAGAAGCTA
CCTCCATAAAACTGAATTGTAGGCAAGTCTATTGGTTATTATCTTTGATA
CTGATTGCGGTGCGAGCCTTTTCCCACTGGATTTCAAGTTTGCCTTCTCC
CCTTTTCGGTCTTGTTTCCCATTACACACCTTTTTTTTTTTTCCCTATTT
TTTCCCCGTTTTTTTTTTTCCCTACTTTTTTTCCCGTATTTCTCG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGAGGGTGCTCAGCTCATGTTCAGAAA
TGTACTTCCCACATATATGTGCAGCACAAATAGGACTCAGTGGTGGTGGG
AGGATGAAATTAGATGGGGGTGTACTTAGGGGAGNNCCCCCCCCCCNCCN
NNCCCCCCCCCCCCCCCCCCCCCCCCCNNCCCNCCCCCCCNCCCCCTCCC
CCCCCCCCCCCCCCCCNNCCCCCCCCTTCCCCCCCCCCCCCCCTCCTCCC
TTCCTTCTTTTCTCCTTTCTTTCCTCCCTCTTTTTTTCTTTTTCCTTCCT
CCCCCCTCCCCCTTTTTTCCCCCCTCCCCCTTTTCCCCCCCCCCCCCCCT
CCCCTTTTTTTCCTCCCCCTTTCTTCTTTTTCCTCCCTCTCCCTTCCTTT
TCCTTTTTCCCTCCTTCCCCCTCTTTTCCCCTTCTTCTCTCTTTCCTCTT
TCTTCCCTCCCTTCTCCTCTTTTCCCCCTTTTTTTTCCCCTCCCTCCCCT
CTCCTCCCCTTTTTTTTTCTTTTCCCCCCCCTTCGCCCCTTCTCTTTTCT
CTTCTTCCCCTTCCTTTTTCTTCTTTTTCCCTTCTCCTCCCTTGCTCTTT
TTCCTTTTTTCTCCCCCTTCTCTTTTCCTCCCCCCCTCTCCTTTTTCCTC
CTTTTTGTCTTTCCCGCTTTTCTTTTCTCCCTCCTTTCCCCCCCTTCTCC
TCCCTTCTTCTTATCCTCTTTCCCTTCCCCTTTTCCTCTCCTCTCCGTTT
TCTCCCCCCTTACCCTCGCCTTCTTCCCCTCTCTTTTCTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d10.b1 MSMg01no341_d10.b1 CHROMAT_FILE:
MSMg01no341_d10.b1 PHD_FILE: MSMg01no341_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:24 2005
         (513 letters)



>mm_chr12_28627272_28628184
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtccatttatttctcctatcaacatccattatggtgatcaaggctcagacgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtccatttatttctcctatcaacatccattatggtgatcaaggctcagacgt 264

                                                                       
Query: 65  gcacagctccttcaaaaacagctgggccactagaagaggtgatgatctcttgttacaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcacagctccttcaaaaacagctgggccactagaagaggtgatgatctcttgttacaaat 324

                                                                       
Query: 125 gtgcattttcaaagaccacaactcaacatgaagttacttgatagccactttgtgaggtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcattttcaaagaccacaactcaacatgaagttacttgatagccactttgtgaggtca 384

                                                                       
Query: 185 tctgttgctatttctgtgaatgactggtagaatcgtttctcagattttgaattgtcatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgttgctatttctgtgaatgactggtagaatcgtttctcagattttgaattgtcatct 444

                                                                       
Query: 245 tctggtggagctcagaggtgcttctccaaagtaggtcctagagacctgcttggaagtata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctggtggagctcagaggtgcttctccaaagtaggtcctagagacctgcttggaagtata 504

                                                                       
Query: 305 ttctgatagcaggtttccaacccctatatgcacttcaggtaacaagttctaagccatctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctgatagcaggtttccaacccctatatgcacttcaggtaacaagttctaagccatctt 564

                                                                       
Query: 365 tgcctacttactataattagcacaaattggcatttgtgtatgtccaagccttattctaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcctacttactataattagcacaaattggcatttgtgtatgtccaagccttattctaaa 624

                                                                       
Query: 425 ttctgtacttgtgcttatgagatttttgtcaatttgatacaggctagagttgtttgggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctgtacttgtgcttatgagatttttgtcaatttgatacaggctagagttgtttgggaa 684

                                        
Query: 485 gaggggctctcacttgagaagctacctcc 513
           |||||||||||||||||||||||||||||
Sbjct: 685 gaggggctctcacttgagaagctacctcc 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_d10.g1 MSMg01no341_d10.g1 CHROMAT_FILE:
MSMg01no341_d10.g1 PHD_FILE: MSMg01no341_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:24 2005
         (107 letters)



>mm_chr12_28676091_28676597
          Length = 507

 Score =  207 bits (107), Expect = 2e-58
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagggtgctcagctcatgttcagaaatgtacttcccacatatatgtgcagcacaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgagggtgctcagctcatgttcagaaatgtacttcccacatatatgtgcagcacaaata 248

                                                          
Query: 61  ggactcagtggtggtgggaggatgaaattagatgggggtgtacttag 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggactcagtggtggtgggaggatgaaattagatgggggtgtacttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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