Query= MSMg01no341_k05.b1 MSMg01no341_k05.b1 CHROMAT_FILE:
MSMg01no341_k05.b1 PHD_FILE: MSMg01no341_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:57 2005
(460 letters)
>mm_chr12_98362609_98363467
Length = 859
Score = 839 bits (434), Expect = 0.0
Identities = 452/458 (98%), Gaps = 1/458 (0%)
Strand = Plus / Plus
Query: 3 tcctctttattctcttcctttttctccttccatgttttctagtgcctctttttatttttt 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcctctttattct-ttcctttttctccttccatgttttctagtgcctctttttatttttt 261
Query: 63 ataatgcatgcatcaaaacatctttcaatattttggcatccaggtaagacctaatgtact 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ataatgcatgcatcaaaacatctttcaatattttggcatccaggtaagacctaatgtact 321
Query: 123 ctactttatgacctatgtagtattgaaatgaccccctgagtctattttcatgattcataa 182
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctacttcatgacctatgtagtcttgaaatgaccccctgagtctattttcatgattcataa 381
Query: 183 aaggtagaaaatgtaaattactcatctctccatcaggttttattgttgctttccagtttt 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 382 aaggtagaaaatgtaaattactcatctctccatcaggttttaatgttgctttccagtttt 441
Query: 243 ggttactgctccactgtctggaacaatgtaccaattctgatttctttttcatttttattt 302
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 442 ggttactgctccactgtctggaacaatgtaccaattctgatttttttttcatttttattt 501
Query: 303 gttttgctttttaaagctgacaatgggctgccctttcctgtctctgctcagaaataagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gttttgctttttaaagctgacaatgggctgccctttcctgtctctgctcagaaataagag 561
Query: 363 gtccaattgtctcttgcaccaaatcaatatcaagttatacatttatgcatttcaataatt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtccaattgtctcttgcaccaaatcaatatcaagttatacatttatgcatttcaataatt 621
Query: 423 ctatctagcttaccagcaagtggttgaagcctatttcc 460
|||||||| |||||||||||||||||||||||||||||
Sbjct: 622 ctatctagtttaccagcaagtggttgaagcctatttcc 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space: 382050
Effective search space used: 382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_k05.g1 MSMg01no341_k05.g1 CHROMAT_FILE:
MSMg01no341_k05.g1 PHD_FILE: MSMg01no341_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:57 2005
(400 letters)
>mm_chr12_98554512_98555311
Length = 800
Score = 652 bits (337), Expect = 0.0
Identities = 385/401 (96%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 1 tcacttttaatttatgtccagaaacagagttgatcccaactgtacttttggaaactcatt 60
|||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 600 tcacttttaatttacgcccagaaacagagttgatcccaactgtacctttggaaa-tcatt 542
Query: 61 ttctgtactcacagagatgcaacttgaaggttcatatatagtgttgagataagctgagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttctgtactcacagagatgcaacttgaaggttcatatatagtgttgagataagctgagac 482
Query: 121 aatctcaagatgaaaggactttcatattcgatgaaaagcaggtctagaataatttgcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatctcaagatgaaaggactttcatattcgatgaaaagcaggtctagaataatttgcaaa 422
Query: 181 ttgggacaaaatttagtcctgagataagggcaaggatctgaagttactgcttcatctaaa 240
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 421 ttgtgacaaaatttagtcctgagataagggcaaggatctgaagttactgtttcatgtaaa 362
Query: 241 atgagatgatggctccagaatgcaaatcagaacagtcatcccaaaagttgattggtcagg 300
| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 361 acgagatgatggctccagaatgcaaatcagaacagccatttcaaaagttgattggtcagg 302
Query: 301 aaaaaataacatgtctcaaatatttaaaactctgagggccagcggatgaattgga-gtgg 359
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 301 aaaaaatagcatgtctcaaatatttaaaactctgagggcctgcggatgaattggatgtgg 242
Query: 360 catgatacttttatttagcaaaggttgtaaaatttcaaggc 400
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gacgatacttttatttagcaaaggttgtaaaatttcaaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
