BAC Information

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BAC

Clone NameMSMg01-341P07
Chromosome12 (Build37)
Map Location 99,698,229 - 99,698,557
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P07.T7 (MSMg01no341_p07.b1)MSMg01-341P07.TJ (MSMg01no341_p07.g1)
ACCAG455624AG455625
length759772
length of high quality
(start - end)
273 (49 - 321)347 (78 - 424)
definitionCHROMAT_FILE: MSMg01no341_p07.b1 PHD_FILE: MSMg01no341_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:20 2005CHROMAT_FILE: MSMg01no341_p07.g1 PHD_FILE: MSMg01no341_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTACCTCTGTACCCCATTTTTAATAGGGTTATTTGGT
TTTTCTGTAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCC
CTATATCCTATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTCGGTTGC
CTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCTATTT
TATGAGGTCCCGTTTGTTAATTCTTGATCTTACAGTACAAGCCATTGGTG
TTGTGTTCAGGAATTTTCCTCTGTGCCCATATGCTCCTGGCTCTTCCCCA
CTTTCTCCTCTATTCTTAGACAATTAGATCTGTAGGATAACATCCTCGAG
TGAGGTAACCCAATCACAAAAGAACTCACATGATATGCACTCACTGATAT
GCGGATATTAGCCCACATGTTTAGAATACCCCTGATACATTTTGTCAAAC
TCCTGACACTTCCTGATTAACGATGATCCCCTGTGTGCATTCTTTCTTTA
TCTTTTTCCACCTCTTCCCCCTTGTTTTTGTTCTCCCCTATTATTCCCTT
TTCTTCCCCTTTTTTTTCTTTTTCGCCCCCCTTTCATTACCTATTCCTCT
CTTTATTTCACTTTTTCCCCTTTCTCTTTTTTTCCTTTTTTTTCGCCCCC
TTCTTTCCTTCTTATTTTTTTTTTGCCTTTTTCCGCTCTCCCCTTTCTTT
TCCTTCTTG
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATGCCTGGTTTGGTAGGAAG
CGCCTTTGTCACCTTGCTGACTGTATAGCCCCATCTCTTTTTGGCCATAG
AAACCCTTATGCTGAGGTTTTCTTTCCCAATAAAACTATCCTGGGAGGGG
TGCTCTGCTGAGAGCTGGCTCACTGGTTAAGAGCACATACTGCCCTTGCA
GAGGGCCTGGCAGAATTCAGTTCCCAGCTCCCATGTTGAGTGACTTAAAA
CCAGTTATGAACTCCAGTTTGAGAGGAATCTGGCGCCCTCTTCTGGTTGC
CATAGGCACTGCATACATGTGCACGTACACATGTAGCCAGTTAAAAATGA
AAATAATCTTGAAAATATCTAAGGCACTAGTCAAATACCAATTTTATTAT
TTTACTGTAGTGATGCAACAGAGTATGATGCTAATCACCCTTACCTTTTC
TCATGTGCCCAGCCTATCCTTCTTCATCACCTCTTCTGATCATTTCTTGC
CCTTCCCCCCCTTTTCTCCCACTTTTGTTTTATATTTTTGTCCCCGTTTT
GTCTCCGCACCTTTCCCTTTTTTGTTTTGTTTCGCCCTCCCCTTTTATTA
TTTAATTTTACTTCTACCCCATCCGCTTTTTTTATTTTATCTACCCCCTT
TTTTTTTATTTCTCTTCTTTCTAAAATCCCTTCATTCCCCCCCTTTTACT
TTCCCCTTTTTCCATTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p07.g1 MSMg01no341_p07.g1 CHROMAT_FILE:
MSMg01no341_p07.g1 PHD_FILE: MSMg01no341_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:20 2005
         (347 letters)



>mm_chr12_99698229_99698975
          Length = 747

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatgcctggtttggtaggaagcgcctttgtcaccttgctgactgtatagccccatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtatgcctggtttggtaggaagcgcctttgtcaccttgctgactgtatagccccatctc 270

                                                                       
Query: 61  tttttggccatagaaacccttatgctgaggttttctttcccaataaaactatcctgggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttttggccatagaaacccttatgctgaggttttctttcccaataaaactatcctgggag 210

                                                                       
Query: 121 gggtgctctgctgagagctggctcactggttaagagcacatactgcccttgcagagggcc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gggtgctcttctgagagctggctcactggttaagagcacatactgcccttgcagagggcc 150

                                                                       
Query: 181 tggcagaattcagttcccagctcccatgttgagtgacttaaaaccagttatgaactccag 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tggcagaattaagttcccagctcccatgttgagtgacttaaaaccagttatgaactccag 90

                                                                       
Query: 241 tttgagaggaatctggcgccctcttctggttgccataggcactgcatacatgtgcacgta 300
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 89  tttgagaggaatctggcgccctcttctggctgccacaggcactgcatacatgtgcacgta 30

                                        
Query: 301 cacatgtagccagttaaaaatgaaaataa 329
           |||||||||||||||||||||||||||||
Sbjct: 29  cacatgtagccagttaaaaatgaaaataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)