BAC Information

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BAC

Clone NameMSMg01-342B23
Chromosome12 (Build37)
Map Location 41,065,622 - 41,269,090
singlet/doubletdoublet
Overlap geneZfp277, Dock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342B23.T7 (MSMg01no342_b23.b1)MSMg01-342B23.TJ (MSMg01no342_b23.g1)
ACCAG455750AG455751
length752777
length of high quality
(start - end)		450 (35 - 484)183 (63 - 245)
definitionCHROMAT_FILE: MSMg01no342_b23.b1 PHD_FILE: MSMg01no342_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:33 2005CHROMAT_FILE: MSMg01no342_b23.g1 PHD_FILE: MSMg01no342_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,268,645 - 41,269,090)(41,065,622 - 41,065,804)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAATA
ATTTCAGAAGCACTTTCATAACTCTAAAAAGGAGAAAAATATAAGAGAAA
TTCACATTCTTAAAGCATAGTACCTTTGTGTCCAGCCCAGAAAAGCAAAT
CACTGAGCGCATAGAAACCCCAGCAGAGGCAAGCCCTGCTAAGCTCAGGG
CTCCCATGTCTAAGGAGGACAGCCATTTACTGGCTCTTCTTCAATAACGA
CTTCTTATTCTCTCTAAAAGGAGAAAATGGCTTATTGTGTGCCTTAACAC
AGTTGATAATTAAGCATTTATTTGTCTACTCAATGAATGTCTGTCCCTAA
CACTTCATTGGAATGTCCCATAAGGTCAGGGAAGGTAATGTTGTGTCTCC
ACTCCCACTTAGTAGCTCTCCTTGCATACAGTAGGCACTCACTAAGTTGG
TCAATCGATTGACTGAGATAATGAAAAAATTGAGGTTTCTCTTAAGTTCC
CAGATTTTATTACATACATACATCCTTCAAAAAGAAATTTTCCTTTTAGC
TTAACAAATATACCGAGAAAAAAAACTACCACCTACCCTTATAAAACAAA
TTAACTATATAAAAAACCTGGTGTTGAACCCCAAAATTCTTATTATGCCC
TTTTTAGGGGAAAACCCTTTATTAAATAAAAGCTCTAAGGGGATTGGAAG
GGAAAAAAAAAAACCCCCCCCCCCTTATAAATGGGTTTGGTTGAATTCCG
AG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGACTTGAACTCACAGAGATCCACCTTCCTCTGCCTCC
TGAGTACTGGAATTAAAGTCATGGGAGAAATTCTTAAAAGAAAGAGGACA
GAGAGAGAGATAGAAGGTAATGGAATCCTGTTGCAAGAAAGCAGAATGGG
GCATCTTTAAAGAGAGAAAGGTAGGGGTGGGGGGATGGGGAGCTGNNNTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTNT
NTNTNTNTNNNTTTTTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTTNCCC
NTTNTNCCCTTTCTTCCCCCCTTTTTTCTTNCTTTCCTTCCTTTCCCCCC
CCTCTCTTTTCCCCCTTCCTCCTCTCCTTTTTTTTTTCCCNCTCCCTCCC
TCTTTTTCTCTTTTTTTTTCCCTTTTTCCTTCTTTTTCTTTTTCTCCTCC
TCCTTCTCTTTTTTTTTTTTTTCTTTTTTCCTTTTTTTTTCCTCTCTTTT
CCTTCTCTCCTCCCCTCCTCCTTCCCCCTCTTTCTTCTCCTTTCCCTTCT
CCTTTTTCCCCCCCCTCCTTTCTCCCTTCTTCNCTCCCTCCTCTCCCCCT
TTTTCTTCTTCCTCTTCTTCTTTCTCTTTTTCCTCCTTTCCTCCTTTTTT
TTTTTTTCTCCCCCCCTCTCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_b23.b1 MSMg01no342_b23.b1 CHROMAT_FILE:
MSMg01no342_b23.b1 PHD_FILE: MSMg01no342_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:33 2005
         (450 letters)



>mm_chr12_41268441_41269290
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaataatttcagaagcactttcataactctaaaaaggagaaaaatataagaga 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattctaaataatctaagaagcactttcataactctaaaaaggagaaaaatataagaga 591

                                                                       
Query: 65  aattcacattcttaaagcatagtacctttgtgtccagcccagaaaagcaaatcactgagc 124
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aattcatattcttaaggcatagtacctttgtgtccagcccagaaaagcaaatcactgagc 531

                                                                       
Query: 125 gcatagaaaccccagcagaggcaagccctgctaagctcagggctcccatgtctaaggagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gcatagaaaccccagcagaggcaagccctgctaagctcagggctcccatgtctaaggagg 471

                                                                       
Query: 185 acagccatttactggctcttcttcaataacgacttcttattctctctaaaaggagaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acagccatttactggctcttcttcaataacgacttcttattctctctaaaaggagaaaat 411

                                                                       
Query: 245 ggcttattgtgtgccttaacacagttgataattaagcatttatttgtctactcaatgaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggcttattgtgtgccttaacacagttgataattaagcatttatttgtctactcaatgaat 351

                                                                       
Query: 305 gtctgtccctaacacttcattggaatgtcccataaggtcagggaaggtaatgttgtgtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtctgtccctaacacttcattggaatgtcccataaggtcagggaaggtaatgttgtgtct 291

                                                                       
Query: 365 ccactcccacttagtagctctccttgcatacagtaggcactcactaagttggtcaatcga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccactcccacttagtagctctccttgcatacagtaggcactcactaagttggtcaatcga 231

                                     
Query: 425 ttgactgagataatgaaaaaattgag 450
           ||||||||||||||||||||||||||
Sbjct: 230 ttgactgagataatgaaaaaattgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no342_b23.g1 MSMg01no342_b23.g1 CHROMAT_FILE:
MSMg01no342_b23.g1 PHD_FILE: MSMg01no342_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:33 2005
         (183 letters)



>mm_chr12_41065422_41066004
          Length = 583

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttgaactcacagagatccaccttcctctgcctcctgagtactggaattaaagtcat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 agacttgaactcacagagatccaccttcctctgcctcccgagtactggaattaaagtcat 260

                                                                       
Query: 61  gggagaaattcttaaaagaaagaggacagagagagagatagaaggtaatggaatcctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagaaattcttaaaagaaagaggacagagagagagatagaaggtaatggaatcctgtt 320

                                                                       
Query: 121 gcaagaaagcagaatggggcatctttaaagagagaaaggtaggggtggggggatggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagaaagcagaatggggcatctttaaagagagaaaggtaggggtggggggatggggag 380

              
Query: 181 ctg 183
           |||
Sbjct: 381 ctg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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