BAC Information

Click to search

BAC

Clone NameMSMg01-342O20
Chromosome12 (Build37)
Map Location 111,280,579 - 111,280,825
singlet/doubletsinglet
Overlap geneLOC100040746
Upstream geneBM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509
Downstream gene3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342O20.T7 (MSMg01no342_o20.b1)MSMg01-342O20.TJ (MSMg01no342_o20.g1)
ACCAG456361AG456362
length751739
length of high quality
(start - end)
247 (55 - 301)487 (62 - 548)
definitionCHROMAT_FILE: MSMg01no342_o20.b1 PHD_FILE: MSMg01no342_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:34 2005CHROMAT_FILE: MSMg01no342_o20.g1 PHD_FILE: MSMg01no342_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCAGAATGTACC
GCATTTTTTTGTTTTTGTTTTTTGTTTTTTTGTTTGTTTTACTTTGACAG
AGCATGTCAGGTTGGACAAGGTACTATGACATGCCAAGAGTGCCTGCACT
GGTGAACTGCATCTCCAGTGGGGTGCACTGAACCTGTGATCAGCTTCTAG
GGGTAATGTCAGATATGCTCTACATACGGGATTATCATTCCAACACCACA
ATAACAGCTGCTAATGTGACCTCTGATGTGGTCTCTTGCCGGGTGAATTG
ATCTCTGAAGCCAGTGCCCCCATCCCCTCTGTGGTTTGATCGCCGTGATC
ATTAGCTTTTCCCCACTGTGACAGGGTGTCTGTCGGAACAACTTGAGCAC
CCCCCTATTGCTTTGCATGGCAGCCTCAGAGGGATCAGTCCATCATGGAG
GAAAAAGCATGTCAGACCTGGCTTTTCCCTCTTTTATCTCTGGGTCCCCA
CAGTCAGGGTGGTTATCTCTCCTCAATCCTCAGGAAAAGCTGTCACAGCC
ATGGCCATATCCATTGCTTCTGTTACCCATGTCTTTTCTAGGCTTCCTGT
GATTTTATATCCCCTTCCTCCCCCCTCGCATCTCATTTATCTCCACCAAT
TGCCTGGTCCAACTCTCATGTACGAACTCATTCTCTGGTATGTACCCCCC
CCCGTCTCTTCGTAATCAGGCAGACAATCTTTCTCCCTCAAAACTTTTCG
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCACACATATAAAAGGTGTTTTGCTCAAATGCACTCCCCA
TTCCGTACCCATAATTCCTTCCCTATACCCCCACCGCTTGTCCCTCCCAA
CTTCTTGCGATCTTCATGAGACAAAGCAAAACACCGAGTCTACCTAGTGC
TGTCTTTGTGCACATAAGTATAGGGCTGTTTCCTGGTTGCAAGGCAATGC
TCTAAGTGGCCACATCCCTGAAGAAAGCTGACTCCTTCTCCCCAGTAGTC
ACCAGTTGCGAATAGCCTCTCAGTAGATGTGTGACTTCATGAGCCCCTCT
CCCACCTTTGCCGGGACTTTGTCTAGCTTGATCTGTGCAGGAAAATGCAG
CCGGTGTGAGTTTATGTTTGCAATAGCTTTGTCCTGTATGGCAAATACTG
ATTCAGTGTAGTCAGCCAGTACCACTGGCTCTTACCATCTTCCCCCCATC
TTCCATGTTGGTCCTGAGTCTGGAGGTGTGATATACAAGTTACGTTTAGA
TCTGAGCACTCCGTGGTCTCTTATTCTCTGCACATTGGCAAGTTGTATGT
CTCTGGAATAATTACCCGTTAATGGTAGGGACAGACATGAACTATTATTT
CCCCTCCTTCCTCTCACTCACTCCTCCTTCCCTTTTTATTTTCCCCCTTT
ATTTCTTCTTTATCACTTTTTATTTATTTTACTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_o20.b1 MSMg01no342_o20.b1 CHROMAT_FILE:
MSMg01no342_o20.b1 PHD_FILE: MSMg01no342_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:34 2005
         (247 letters)



>mm_chr12_111280343_111280989
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttgtttttgttttttgtttttttgtttgttttactttgacagagcatgtcaggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttttttgtttttgttttttgtttttttgtttgttttactttgacagagcatgtcaggttg 424

                                                                       
Query: 61  gacaaggtactatgacatgccaagagtgcctgcactggtgaactgcatctccagtggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gacaaggtactatgacatgccaagagtgcctgcactggtgaactgcatctccagtggggt 364

                                                                       
Query: 121 gcactgaacctgtgatcagcttctaggggtaatgtcagatatgctctacatacgggatta 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 363 gcactgaacctgtgatcagcttctaggggtaatgtcagatacgctctacatacgggatta 304

                                                                       
Query: 181 tcattccaacaccacaataacagctgctaatgtgacctctgatgtggtctcttgccgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcattccaacaccacaataacagctgctaatgtgacctctgatgtggtctcttgccgggt 244

                  
Query: 241 gaattga 247
           |||||||
Sbjct: 243 gaattga 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)