BAC Information

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BAC

Clone NameMSMg01-343B16
Chromosome12 (Build37)
Map Location 26,505,982 - 26,707,102
singlet/doubletdoublet
Overlap geneLOC668726
Upstream geneLOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343B16.T7 (MSMg01no343_b16.b1)MSMg01-343B16.TJ (MSMg01no343_b16.g1)
ACCAG456495AG456496
length776821
length of high quality
(start - end)		417 (33 - 449)243 (63 - 305)
definitionCHROMAT_FILE: MSMg01no343_b16.b1 PHD_FILE: MSMg01no343_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:48 2005CHROMAT_FILE: MSMg01no343_b16.g1 PHD_FILE: MSMg01no343_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,505,982 - 26,506,395)(26,706,860 - 26,707,102)
sequence
CCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACACTGG
TTGGAACTTATCTACACTCCCTCCAACAAAGCCATGAATACTCCAACAAG
ACCACATCTCTTAGTAGTGCCATTCCCTATGGCCAACCATCCAAACACAT
GAGTCTGTGGAGGCCAAAACTACTCAAACCACCACAGTTAGAAATACCAA
CAGTGCATTTGAACAAGTCTGGAGTAAACCCTTTAAAGAGTACTGTATGG
TTTTTAGAAGGACTTTTCAGTGTCGTGAAGAGACTTTAACCCAAAGAGAA
GTCTGGTATCAGCCCTCAGCTCCTGGAAAGCCATCTCCTAACAAAAAATT
ATTTTATCAGAAATTATATCAACCTAACGGTATGGTTTCTGATAAAATAA
TTTTTGTTTGTCTGGACTTTGGGTCATGCACAGAGAACCTAACATTGTGG
TTGAGGATGGAGTTTCATGTTCTGTTTTGTCCCCTGAAATCTCCGGATGT
AATGCCTACTGTCATTTTGATATCCTCTCTTTCCTCTATCTTTATCTTGT
TTCCTTTTTCCTCCTCCTCTCTCTCCTTTCTTTTCCTCCTGTTTATTTTT
TTTCTCGTAATTCCTTTTATCATCTCATATTTTTTCAATTTCCCTTATTT
CCTTTATTTTTATTTTTTATCCCGTTCTACCTTTCAGTTATTCCGTTTTC
TCCTCCCCCCATCATCCCATATTTTCCCCTCCTTCTTGTTTTTCTTCTCT
CCCTATCCTTTCTACTCTCTAATCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAAATCGGTTTCCCCTTTTTCCTGATTCTCCTATTTTT
ATGTCAGCAATGAGGAGCTGGATTGCCCAGCAAAGTGCTGATGGGTGCAA
TGCTCTGCCTGTCTGGAGATGAACTTGGAAGACTTATGGTTTAGGGAGGT
TTTTGTGATACTCAAGTGGAGAAGCCGGCTCANAGCACTTAATACAGTGT
GATGAGTGAATTGTCAGGTCTCTTCTCTTACAGCAGGATTCCTGCTGACC
TAAGGGAAACCATCCATGAGGAGGTATCTGCTGATCCTATTGTTTAGGGG
TATTTCCGCACTCCTTGGATCCATCCCTTCTGTCTTTGACGACATGTTTT
TTTTCACCCCCCCCCCCATTTTTGTTCTCTCCTAGATTTCCTGTCACATT
CATATATCCGCTTGGTTTATCATATCTAAGTTTATATCCTCTCGCCCCTC
TTTACCCGTTTATCTTTTTTTTTTATTTTTTTTTTTTCCCCCCCTTCGTT
TATTTCTTTTTTTTTTTTTTTCCCCCCTTTATTTCTTATTATCCTTCTCT
TTCTTTTACGTTCTATCTTCCCTCTCTCTAATATTTTTCCTACTCTTCCT
ATCATCCTTTATTCTTTTTATTTGTACTCATCCTCACTCTCCATTTTCTT
TCTCTACCCCATTTTATCGTGTTCCTTCTTTTCATTTTTACTCCACTCCA
TTTTCTAGATTCTCTTCCATCTGTTTCTGTGTCTATTTTCTTTCCTTACT
CCTTTCATCTTCTGTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_b16.b1 MSMg01no343_b16.b1 CHROMAT_FILE:
MSMg01no343_b16.b1 PHD_FILE: MSMg01no343_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:48 2005
         (417 letters)



>mm_chr12_26505779_26506595
          Length = 817

 Score =  793 bits (410), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacactggttggaacttatctacactccctccaacaaagccatgaatactcca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacactgggtggaacttatctacactccctccaacaaagccatgaatactcca 263

                                                                       
Query: 64  acaagaccacatctcttagtagtgccattccctatggccaaccatccaaacacatgagtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaagaccacatctcttagtagtgccattccctatggccaaccatccaaacacatgagtc 323

                                                                       
Query: 124 tgtggaggccaaaactactcaaaccaccacagttagaaataccaacagtgcatttgaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtggaggccaaaactactcaaaccaccacagttagaaataccaacagtgcatttgaaca 383

                                                                       
Query: 184 agtctggagtaaaccctttaaagagtactgtatggtttttagaaggacttttcagtgtcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtctggagtaaaccctttaaagagtactgtatggtttttagaaggacttttcagtgtcg 443

                                                                       
Query: 244 tgaagagactttaacccaaagagaagtctggtatcagccctcagctcctggaaagccatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaagagactttaacccaaagagaagtctggtatcagccctcagctcctggaaagccatc 503

                                                                       
Query: 304 tcctaacaaaaaattattttatcagaaattatatcaacctaacggtatggtttctgataa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctaacaaaaaattattttatcagaaattatatcaacctaacggtatggtttctgataa 563

                                                                 
Query: 364 aataatttttgtttgtctggactttgggtcatgcacagagaacctaacattgtg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aataatttttgtttgtctggactttgggtcatgcacagagaacctaacattgtg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_b16.g1 MSMg01no343_b16.g1 CHROMAT_FILE:
MSMg01no343_b16.g1 PHD_FILE: MSMg01no343_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:48 2005
         (243 letters)



>mm_chr12_26706660_26707302
          Length = 643

 Score =  456 bits (236), Expect = e-133
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatcggtttcccctttttcctgattctcctatttttatgtcagcaatgaggagctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caaatcggtttcccctttttcctgattctcctatttttatgtcagcaatgaggagctgga 384

                                                                       
Query: 61  ttgcccagcaaagtgctgatgggtgcaatgctctgcctgtctggagatgaacttggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgcccagcaaagtgctgatgggtgcaatgctctgcctgtctggagatgaacttggaaga 324

                                                                       
Query: 121 cttatggtttagggaggtttttgtgatactcaagtggagaagccggctcanagcacttaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 323 cttatggtttagggaggtttttgtgatactcaagtggagaagccggctcaaagcacttaa 264

                                                                       
Query: 181 tacagtgtgatgagtgaattgtcaggtctcttctcttacagcaggattcctgctgaccta 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 tacagtgtgatgagtgaattgtcagggctcttctcttacagcaggattcctgctgaccta 204

              
Query: 241 agg 243
           |||
Sbjct: 203 agg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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