BAC Information

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BAC

Clone NameMSMg01-343B18
Chromosome12 (Build37)
Map Location 26,012,484 - 26,185,091
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
Downstream geneLOC100042973, LOC100042974, LOC668726, Rnf144, Rsad2, Tyki, LOC668731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343B18.T7 (MSMg01no343_b18.b1)MSMg01-343B18.TJ (MSMg01no343_b18.g1)
ACCAG456499AG456500
length774795
length of high quality
(start - end)		355 (42 - 396)384 (67 - 450)
definitionCHROMAT_FILE: MSMg01no343_b18.b1 PHD_FILE: MSMg01no343_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:49 2005CHROMAT_FILE: MSMg01no343_b18.g1 PHD_FILE: MSMg01no343_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,012,484 - 26,012,832)(26,184,708 - 26,185,091)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCTTAAACTCAGGTAATTAACTTTCATTTTCTATCTAAGTAGTTTTGGT
TGATTTACATGAAAATCTGTTTGAAAATTTCAGTGATAAGAAAAATCAAT
GGTTCTTGCTGGAATCCCCAGCACGGCTTCTTCCGTAAGCATCCACACGG
ATACGAAACTCTTGTCGTTTCTTTCTCTAGGATTCAAGTATCAGGGCTCC
TTCTCACCTCCCACTTGTACCATGAGGTGGTGCTAAGCATGCCATGATTT
TCATGATAAAATTTTCAGGAACACTCTCTCTGTGTAGTTGGAACTTTGAA
AAGATGGAGATGATTAATTAATGGGAATTAAAAATAGCATTATGGAGCTG
TAGAGATGGTTCAGCACAACACTCACAGAGGAACTGAGTTCTATTTCCTA
CACGTGTCAAGTGGCTTACTATTGTCAGTTTTTTCAGCTCCTGAATTATT
CTCATTTCAACTGTTGTATTCGTCTTTACACGGCTCTAGTACAGCTCGCT
CTTAACTCTTATTTTTTAAGCCTATATATTATTCTATTCTTTCAATTTCC
TCTTAGTACTTCATCATCTCTTTACGACTTTGCATCTTCTCTCTCTTTCG
TTTTAAATTTATTGTGTATCACCTCTATTATTCTTCCTTTCCATTCTCGC
CCACTACAAACTACTTTTTTCCTATTCTTCTTCCTTTATCTATCCCCCTC
TCTATTCTATCTTCATTATTCTTG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACGCTTTCCTCTCCTCTTCCTTCCTTCTCACTT
ACCTCACCTATAGCTCCTGGAGACAGCGATGTGCAAACAACAGCCTTTTA
ACTGATAAAGAAATGCAAAACTAAGAAAATGTGAGCCGAGGGGCTTTGTG
GTAATAGTCCAGAGTTCAGGTGTAGAACAGTTCTGGTTTTTCCCATCTCA
CTGAAAGATAAAGTATTAGAAGACCTCTCCTCTCCTCTGCTTTCACCGCA
CTGCTACCTGAGAAAACACCATTGCTAGGTGGACCTGAGCCATCTCTAGC
CTACTTTTCCTCAAAATTGGGCCTACTCCATGCCAGTGGGCAATTATTGG
CCTCACATGAATTCTCTCTTCCATACCCAACCTCTACTTACCCCACGGCT
TGCTTCCTCCTGCTGTTTCTTCAGTCACCCCTTTGCAATTTCCTATAGAG
AATCCCCTCTTTTTCCCTACCCAAAGTCCCCTGGCCTTCCCCCATAGTGT
CCGCCCCCCTTTGTTTTTAAATGGTTTCCCTGGCAAAACTCTTCTTGAAA
TTAAAATTTTTGTGGCTCACCACGGCACCCTCTTTATACATAAAATACCT
CCCCCCCCCCTCTCTCCGCACTTTCTATCAACCTTTATGACATTTTTCCC
TTTTTTCCTCTCCCTCTCCCTTGTGTTTTATATACCTGTGACTCTCTTTT
ATTATACTTTTACTCTCCTCTCTCGCTTTTCTTTTTAGGTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_b18.b1 MSMg01no343_b18.b1 CHROMAT_FILE:
MSMg01no343_b18.b1 PHD_FILE: MSMg01no343_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:49 2005
         (355 letters)



>mm_chr12_26012278_26013032
          Length = 755

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttaaactcaggtaattaactttcattttctatctaagtagttttggttgattta 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttaaactcaggtaattaactttcattttctatctaagtagttttggttgattta 266

                                                                       
Query: 67  catgaaaatctgtttgaaaatttcagtgataagaaaaatcaatggttcttgctggaatcc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catgaaaatctgtttgaaaatttcagtgataagaaaaatcaatggttcttgctggaatcc 326

                                                                       
Query: 127 ccagcacggcttcttccgtaagcatccacacggatacgaaactcttgtcgtttctttctc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccagcacggcttcttccgtaagcatccacacggatacgaaactcttgtcgtttctttctc 386

                                                                       
Query: 187 taggattcaagtatcagggctccttctcacctcccacttgtaccatgaggtggtgctaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taggattcaagtatcagggctccttctcacctcccacttgtaccatgaggtggtgctaag 446

                                                                       
Query: 247 catgccatgattttcatgataaaattttcaggaacactctctctgtgtagttggaacttt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catgccatgattttcatgataaaattttcaggaacactctctctgtgtagttggaacttt 506

                                                            
Query: 307 gaaaagatggagatgattaattaatgggaattaaaaatagcattatgga 355
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaaagatggagatgattaattaatgggaattaaaaatagcattatgga 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_b18.g1 MSMg01no343_b18.g1 CHROMAT_FILE:
MSMg01no343_b18.g1 PHD_FILE: MSMg01no343_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:49 2005
         (384 letters)



>mm_chr12_26184508_26185291
          Length = 784

 Score =  743 bits (384), Expect = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgctttcctctcctcttccttccttctcacttacctcacctatagctcctggagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cacgctttcctctcctcttccttccttctcacttacctcacctatagctcctggagacag 525

                                                                       
Query: 61  cgatgtgcaaacaacagccttttaactgataaagaaatgcaaaactaagaaaatgtgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgatgtgcaaacaacagccttttaactgataaagaaatgcaaaactaagaaaatgtgagc 465

                                                                       
Query: 121 cgaggggctttgtggtaatagtccagagttcaggtgtagaacagttctggtttttcccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cgaggggctttgtggtaatagtccagagttcaggtgtagaacagttctggtttttcccat 405

                                                                       
Query: 181 ctcactgaaagataaagtattagaagacctctcctctcctctgctttcaccgcactgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctcactgaaagataaagtattagaagacctctcctctcctctgctttcaccgcactgcta 345

                                                                       
Query: 241 cctgagaaaacaccattgctaggtggacctgagccatctctagcctacttttcctcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cctgagaaaacaccattgctaggtggacctgagccatctctagcctacttttcctcaaaa 285

                                                                       
Query: 301 ttgggcctactccatgccagtgggcaattattggcctcacatgaattctctcttccatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgggcctactccatgccagtgggcaattattggcctcacatgaattctctcttccatac 225

                                   
Query: 361 ccaacctctacttaccccacggct 384
           ||||||||||||||||||||||||
Sbjct: 224 ccaacctctacttaccccacggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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