BAC Information

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BAC

Clone NameMSMg01-343C13
Chromosome12 (Build37)
Map Location 25,142,201 - 25,335,107
singlet/doubletdoublet
Overlap geneLOC629364, Taf1b, Grhl1, EG629383
Upstream geneLOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714
Downstream geneKlf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343C13.T7 (MSMg01no343_c13.b1)MSMg01-343C13.TJ (MSMg01no343_c13.g1)
ACCAG456537AG456538
length759759
length of high quality
(start - end)		274 (52 - 325)434 (73 - 506)
definitionCHROMAT_FILE: MSMg01no343_c13.b1 PHD_FILE: MSMg01no343_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:53 2005CHROMAT_FILE: MSMg01no343_c13.g1 PHD_FILE: MSMg01no343_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(25,334,836 - 25,335,107)(25,142,201 - 25,142,634)
sequence
CTATACGACTCCTATATGCAGAGAATCCGCGGAATTCACATGTCTTTCTA
CTGGGGCATTTAACACACATGGAGTTAGTCTTCTACTTGGGCCTGTTTAA
ATTGTTTTTGCTTCATTCCCACACTGAATTTCTGACTCCCCGTGTTCACC
CTTACCTATAATGCCTCCGCCCCATCCAACGTCCCTACTGTCTCCTGTTC
TCTCCACACGTGGTTTTATGGCGTATGTGTTGGAGAATAATCTCCAGAGT
AATATGTTAATAGTATTTGGAGAGGGAGCCTTTGGAGGGTGATTGGGATT
AAGGAAGGGTTATGGGGTCTTAANATTAAAGAGNATAGTTAGTTTGTTCA
CTCTATCTGATCACGTGACACTCTTGTGTCATAATCCATCAAGAATACCC
CCTTCACACTTACACACATTCTTATTCTCACACACCTACTCCCCCACTTA
TATTCTCCCCCCCTTTCTATATTCACTCTCGTTTTCATTTTGCACCAGAT
TTATATCATCCTTGGTTTGTCCAGTTTTTTCACTTATATGTTTTTTATAC
TCATCTATTCTTATTCCCCTTTCTCTTTTTATTCTCTTTCTTGCTTTTTT
TTTTTTTTCATATCCCCCCCTTTTGTTTCCTTCTCCCTCTATCTTCTATA
TATAATTTACTTCTCACTCTTTTTCTTCTTATTATGTTCTTATTCTATTT
ACTTCCTTTTATTTCTCTTTCCCCTCTGCTCTTTTCTTTTCCTCTATACT
ACTTTACTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTGTGGCAACTTTACAGATAAACTCA
GGGCTACACTTAGAATGTGTAAAAATTTTTGAGTTGACCACACAGCCGGA
GAGGGATGAAGCCAGAATCGATAGTACAAGAGTCCTCATTTTAAGATGTA
AAATAGTCGGGCATTGGTGGTGGCAGTGCATACCTTTAATCCCAGCACTT
GGGAGTGGGAGGCAGAGGCAGGTGGATTTCTAAGTTTGAGGCCAGCCTGG
TCTACAGAGTGATTTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTC
TCANAAACCANAAAAAAAAAAAAGAAAAAGAAAAAAAAGAGAGATGCTCA
AGATGTAAAATATGTCACAATGAATAAAGTACCAAGTTTTGAAGAAGAAA
TGTCTTATAAAATGGTATCTGAGAACAGGTGCAAATGGCAGAAACAATGA
AATTGGCTCTTGGNAGACACTTAGGAAATGTAGATCATTCTGAGCTGATC
AGAAGACCACAGACCCAAGGGGGAACATCTTCTGAATGGATCGCAGGAAA
ATTGTTTGAATGGTTAAACCCGGTGGAGAAAAAAAGTCTCCAAGAAAAAA
TCCTGAATTTGGGAATTAATAACAGGGGGAATTTTGTGAGGTTTTCTCTT
CCCAGTTAATCTCAATCCTGACGTTGCCGTGGAACTCTTGTTTGCGCTCT
CCGGTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_c13.b1 MSMg01no343_c13.b1 CHROMAT_FILE:
MSMg01no343_c13.b1 PHD_FILE: MSMg01no343_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:53 2005
         (274 letters)



>mm_chr12_25334636_25335309
          Length = 674

 Score =  526 bits (272), Expect = e-154
 Identities = 272/272 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggcatttaacacacatggagttagtcttctacttgggcctgtttaaattgtttttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tggggcatttaacacacatggagttagtcttctacttgggcctgtttaaattgtttttgc 413

                                                                       
Query: 61  ttcattcccacactgaatttctgactccccgtgttcacccttacctataatgcctccgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttcattcccacactgaatttctgactccccgtgttcacccttacctataatgcctccgcc 353

                                                                       
Query: 121 ccatccaacgtccctactgtctcctgttctctccacacgtggttttatggcgtatgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccatccaacgtccctactgtctcctgttctctccacacgtggttttatggcgtatgtgtt 293

                                                                       
Query: 181 ggagaataatctccagagtaatatgttaatagtatttggagagggagcctttggagggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggagaataatctccagagtaatatgttaatagtatttggagagggagcctttggagggtg 233

                                           
Query: 241 attgggattaaggaagggttatggggtcttaa 272
           ||||||||||||||||||||||||||||||||
Sbjct: 232 attgggattaaggaagggttatggggtcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no343_c13.g1 MSMg01no343_c13.g1 CHROMAT_FILE:
MSMg01no343_c13.g1 PHD_FILE: MSMg01no343_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:53 2005
         (434 letters)



>mm_chr12_25142001_25142834
          Length = 834

 Score =  828 bits (428), Expect = 0.0
 Identities = 432/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgtggcaactttacagataaactcagggctacacttagaatgtgtaaaaatttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgtggcaactttacagataaactcagggctacacttagaatgtgtaaaaatttttga 260

                                                                       
Query: 61  gttgaccacacagccggagagggatgaagccagaatcgatagtacaagagtcctcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgaccacacagccggagagggatgaagccagaatcgatagtacaagagtcctcatttt 320

                                                                       
Query: 121 aagatgtaaaatagtcgggcattggtggtggcagtgcatacctttaatcccagcacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatgtaaaatagtcgggcattggtggtggcagtgcatacctttaatcccagcacttgg 380

                                                                       
Query: 181 gagtgggaggcagaggcaggtggatttctaagtttgaggccagcctggtctacagagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgggaggcagaggcaggtggatttctaagtttgaggccagcctggtctacagagtga 440

                                                                       
Query: 241 tttccaggacagtcagggctacacagagaaaccctgtctcanaaaccanaaaaaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 441 tttccaggacagtcagggctacacagagaaaccctgtctcaaaaaccaaaaaaaaaaaaa 500

                                                                       
Query: 301 agaaaaagaaaaaaaagagagatgctcaagatgtaaaatatgtcacaatgaataaagtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaaagaaaaaaaagagagatgctcaagatgtaaaatatgtcacaatgaataaagtac 560

                                                                       
Query: 361 caagttttgaagaagaaatgtcttataaaatggtatctgagaacaggtgcaaatggcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagttttgaagaagaaatgtcttataaaatggtatctgagaacaggtgcaaatggcaga 620

                         
Query: 421 aacaatgaaattgg 434
           ||||||||||||||
Sbjct: 621 aacaatgaaattgg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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