Query= MSMg01no344_b06.b1 MSMg01no344_b06.b1 CHROMAT_FILE:
MSMg01no344_b06.b1 PHD_FILE: MSMg01no344_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:09 2005
(513 letters)
>mm_chr12_68695536_68696447
Length = 912
Score = 915 bits (473), Expect = 0.0
Identities = 500/509 (98%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 5 gaattcttatctatatatatttatgaacattaaataaaacatcctttaatattttttaaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 712 gaattcttatctatagatatttatgaacattaaataaaacatcctttaatattttaaaaa 653
Query: 65 aagaaaccaataaaaacattccaaatttatcattcaaggtaaggaaatactagcagaaaa 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 652 aagaaaccaataaaaacattccaaatttatcattcaaggtaagtaaatactagcagaaaa 593
Query: 125 caatgaatgaaaaaaacatagaagcaggcaggcacatctggttcagaatcctgtgtactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 caatgaatgaaaaaaacatagaagcaggcaggcacatctggttcagaatcctgtgtactt 533
Query: 185 tttaaatcctcactttaatttttggaaaagtaataaataccatagtattatattaaattg 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 532 ttaaaatcctcactttaatttttggaaaagtaataaataccatagtattatattacattg 473
Query: 245 taaaacttgggagaaaatagaaagtattgatgtcttgagcagacagagatatgttacttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taaaacttgggagaaaatagaaagtattgatgtcttgagcagacagagatatgttacttt 413
Query: 305 cataacttgcatgttaagcaagtccagaggcatgactcatggtcacccagatctttcaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cataacttgcatgttaagcaagtccagaggcatgactcatggtcacccagatctttcaac 353
Query: 365 aacaatcgaggtgaagtaggttaacatttttttctaaaattattctgagttcttttttgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 352 aacaatcgaggtgaagtaggttaacatttttttctaaaattattctgagttctttcttgc 293
Query: 425 ccaatgacatgctgggaacaattagtcagtgaattttgcatttccttctattagcaatac 484
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 292 ccaatgaaatgctgggaacaattagtcagtgaattttg-atttccttctattagcaatac 234
Query: 485 ttaagaattcatttccaatttgtctataa 513
|||||||||||||||||||||||||||||
Sbjct: 233 ttaagaattcatttccaatttgtctataa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_b06.g1 MSMg01no344_b06.g1 CHROMAT_FILE:
MSMg01no344_b06.g1 PHD_FILE: MSMg01no344_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:09 2005
(594 letters)
>mm_chr12_68525806_68526805
Length = 1000
Score = 1019 bits (527), Expect = 0.0
Identities = 581/601 (96%), Gaps = 8/601 (1%)
Strand = Plus / Plus
Query: 1 actatgcctctgcaatagtttgaagtagtaccttggctttataaataaatgatgctatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgcctctgcaatagtttgaagtagtaccttggctttataaataaatgatgctatca 260
Query: 61 tgaatggaatataaggtacctttagaattttgaacttaatacatacaaaattgcacatca 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 261 tgaatggaatataaggtacctttagaattttgaacttaatacatacaaaactgcgcatca 320
Query: 121 atagacaatttaggcaaagctttaaatttttattttgtgtatgattatttcagactttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagacaatttaggcaaagctttaaatttttattttgtgtatgattatttcagactttac 380
Query: 181 taaaatataggagtcctctaaggtacttacattcctgatgtagaagaaaaataaaaaagg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 381 taaaatataggagtcctctaaggttcttacattcctgatgtagaagaaaaacaaaaaagg 440
Query: 241 aaactgcaatgactgtaggtcaacacatcctaacctaatgacaaacgtgtcttacataac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactgcaatgactgtaggtcaacacatcctaacctaatgacaaacgtgtcttacataac 500
Query: 301 acagttagcacggattagattgcagagactcttttt-aaaaaa-atgttcaaagtagatc 358
|||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||
Sbjct: 501 acagttagcacggattagattgcagagagtcttttttaaaaaatatgtccaaagtagatc 560
Query: 359 atatgaaatcttcagtgaataaa-aaaattgttgctttaaaaaagaggaaaccagaagaa 417
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 561 atatgaaatcttcagtaaataaataaaat-gttgctttaaaaaagaggaaaccagaagaa 619
Query: 418 aatcattgtggaaagtttggttaagatgctatttcatttgtacagtttagaaatgagaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 aatcattgtggaaagtttggttaagatgctatttcatttgtacagtttagaaatgggaag 679
Query: 478 tactgacaagaggttgagttaatatgtacatgtgctgg----aaaaaaaaaagcatagac 533
||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||
Sbjct: 680 tactgacaagaggttgagttaatatgtacgtgtactgggggaaaaaaaaaaagcctagac 739
Query: 534 agatttggaagcaaaattgattggaccgggtattattgcttaagttgatcatgatatagg 593
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 740 agatttggaagcaaaattgattggaccgggtattattacttaagttgatcatgatatagg 799
Query: 594 a 594
|
Sbjct: 800 a 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 1000
Length adjustment: 10
Effective length of query: 584
Effective length of database: 990
Effective search space: 578160
Effective search space used: 578160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
