Query= MSMg01no344_d15.b1 MSMg01no344_d15.b1 CHROMAT_FILE:
MSMg01no344_d15.b1 PHD_FILE: MSMg01no344_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:20 2005
(508 letters)
>mm_chr12_95811952_95812858
Length = 907
Score = 818 bits (423), Expect = 0.0
Identities = 480/499 (96%), Gaps = 5/499 (1%)
Strand = Plus / Plus
Query: 13 tataatcctgcaacgtgccctttacactgagat-tgcttagcaatactcactgtgatttt 71
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 211 tataaccctgcaacgtgccctttacactgag-tctgcttagcaatactcactgtgatttt 269
Query: 72 tgaaatgattgtatttaggttgttcacttttgtttgtttgtttgcttg-ttttttggatg 130
||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 270 tgaaatgattgtatttacgttgttcttttttgtttgtttgtttgcttgtttttttggatg 329
Query: 131 tttggttttg-ttttttccagtcacagtttctttgtgtagccctgcacgtcctgtaactc 189
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 tttggttttgtttttttccagtcacagtttctttgtgtagccctgaacgtcctgtaactc 389
Query: 190 tctgtaaatcaggccatcttcgagctgagttctgcttgcctctacctccctagtgctggg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 tctgtaaatcaggccatcttcgagctgagttctgcttgcctctacctccctagtgcttgg 449
Query: 250 attaaaggtgtatagcaccgcatccagctatgtatttaatttttttaacatcagacattt 309
||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 attaaaggtatataccacagcatccagctatgtatttaa-ttttttaacatcagacattt 508
Query: 310 gcttataataaaataattctcttcctcaaaaaaatgaatttaaatttttcatacaataac 369
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 509 gcttataataaaataattctcttcctcaaaaaaatgaatttaagtttttcatacaataac 568
Query: 370 caatccagctcaaatgaccaagtttacagggaaaaatttcaatcttttcaagggtttcta 429
||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 569 caacccagctcaaatgaccaagtttacagtgaaaaatttcaatcttttcaaggctttcta 628
Query: 430 actgtacacaccactaagcaccaaatgacaaatgtataataaatatatacaactgtgcca 489
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 actgtatacaccactaagcaccaaatgacaaatgtataataaatatatacaactgtgcca 688
Query: 490 aaatctctgaatcttcaac 508
|||||||||||||||||||
Sbjct: 689 aaatctctgaatcttcaac 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_d15.g1 MSMg01no344_d15.g1 CHROMAT_FILE:
MSMg01no344_d15.g1 PHD_FILE: MSMg01no344_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:20 2005
(488 letters)
>mm_chr12_95995558_95996445
Length = 888
Score = 944 bits (488), Expect = 0.0
Identities = 488/488 (100%)
Strand = Plus / Minus
Query: 1 atgtgcatagtcaaagtgtaatctccccaaacatactgacacatggcaccatgtagacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atgtgcatagtcaaagtgtaatctccccaaacatactgacacatggcaccatgtagacac 629
Query: 61 agctggaacacacgttcatcaatatccaactaacagtttccactagaatactcttgcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agctggaacacacgttcatcaatatccaactaacagtttccactagaatactcttgcgga 569
Query: 121 cagacacatatgtttcttcctatcttattaaggcatactgcctcattcatgcagggatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagacacatatgtttcttcctatcttattaaggcatactgcctcattcatgcagggatca 509
Query: 181 gaaacacattaattcacttccaatttgcaatgcttgtcttggtatccaggcacactgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaaacacattaattcacttccaatttgcaatgcttgtcttggtatccaggcacactgaag 449
Query: 241 cagaaataaccattagttacagcctactgcacagcaacattatggtaagatcaagaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagaaataaccattagttacagcctactgcacagcaacattatggtaagatcaagaacca 389
Query: 301 cactcattatgatcggtctcacagaatcttccagcttgttcaacagggaagatagaggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cactcattatgatcggtctcacagaatcttccagcttgttcaacagggaagatagaggca 329
Query: 361 gggtgttcagagtctctatggtaggagcctcaacattggcaggtgtctcctccaaaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gggtgttcagagtctctatggtaggagcctcaacattggcaggtgtctcctccaaaggag 269
Query: 421 ttagtgacagttttacagttcagtcctctgttcctaggaggacattggcacaaaaagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttagtgacagttttacagttcagtcctctgttcctaggaggacattggcacaaaaagccc 209
Query: 481 ctatcttc 488
||||||||
Sbjct: 208 ctatcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
