Query= MSMg01no345_k21.b1 MSMg01no345_k21.b1 CHROMAT_FILE:
MSMg01no345_k21.b1 PHD_FILE: MSMg01no345_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:11 2005
(550 letters)
>mm_chr12_111980172_111981121
Length = 950
Score = 1000 bits (517), Expect = 0.0
Identities = 538/547 (98%), Gaps = 6/547 (1%)
Strand = Plus / Minus
Query: 8 ttcatagaggc---attcacaaactcaaggtcagcctgggctgtatggaaaaactttgtc 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttcatagaggcaaaat--acaaactcaaggtcagcctgggctgtatggaaaaactttgtc 490
Query: 65 tc-aatattaattgggggtgggggggaacagctagctggctgtggtagtgtctcctcaat 123
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcaaatattaattgggggtgggagggaacagctagctggctgtggtagtgtctcctcaat 430
Query: 124 atgctctaaggccctaggttcaattcttagcagtgtcgaacaaaaacaaacaaacaatac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgctctaaggccctaggttcaattcttagcagtgtcgaacaaaaacaaacaaacaatac 370
Query: 184 tactcactttactcaagtgtctaatctggatttgaatgtcttccacattagggcttctag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tactcactttactcaagtgtctaatctggatttgaatgtcttccacattagggcttctag 310
Query: 244 gtggtcccaataattgtaaaacttcgtatgccttggtctgatgagatgtctcagtggaag 303
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 309 gtggtcccaataattgtaaaacttcgtatgccttgggctgaggagatgtctcagtggaag 250
Query: 304 agtgcttgtttaacatctattaggaggcccttgggttttatcccctgcacatgcatgcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agtgcttgtttaacatctattaggaggcccttgggttttatcccctgcacatgcatgcac 190
Query: 364 gcacacatgcataccatattccttgaagaaaaaagtagaacacaaaaatatatcaaaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gcacacatgcataccatattccttgaagaaaaaagtagaacacaaaaatatatcaaaata 130
Query: 424 gccaactgtgaaaaatgtaaaagacctgctcactacttaccccaatagtaactcctgctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gccaactgtgaaaaatgtaaaagacctgctcactacttaccccaatagtaactcctgctt 70
Query: 484 tcctggaacaatgactaaggataccattttgtctgcttgctttgttgagacagctctcac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tcctggaacaatgactaaggataccattttgtctgcttgctttgttgagacagctctcac 10
Query: 544 tctatgg 550
|||||||
Sbjct: 9 tctatgg 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_k21.g1 MSMg01no345_k21.g1 CHROMAT_FILE:
MSMg01no345_k21.g1 PHD_FILE: MSMg01no345_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:11 2005
(570 letters)
>mm_chr12_111850393_111851362
Length = 970
Score = 1025 bits (530), Expect = 0.0
Identities = 560/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 1 atttcctataacatcaacatagacattcattacggggtaaagtccaacaggtgagtagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcctataacatcaacatagacattcattacggggtaaagtccaacaggtgagtagtg 260
Query: 61 tgagcgccacagtgagaccacgccacaggtccactgcacatgagcacagcttgagctaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcgccacagtgagaccacgccacaggtccactgcacatgagcacagcttgagctaga 320
Query: 121 tttctccatcagtgtaaatgctgacccattgcagttctagttgtcatacctggtactgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctccatcagtgtaaatgctgacccattgcagttctagttgtcatacctggtactgcg 380
Query: 181 gttaggtttgggctgatgtttacttactaggagtttcaggtttctatctgattgtattct 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gttaggtttgggctgatgtttacttactaggagtttcaggtttctatccgattgtattct 440
Query: 241 ttgatttaatattctctgcttttgtcttactttgtcattataaatgagtagtgaacgccc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgatttaatagtctctgcttttgtcttactttgtcattataaatgagtagtgaacgccc 500
Query: 301 tgtgcacaggcctgatcttttctggataaatccttcaggagtgtgttacccgtccatagg 360
|||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct: 501 tgtgcacaggcctgatcttttcagggtaaatccttcaggagtgtgttgcccgtccatagg 560
Query: 361 aaaggcatcattgaggctttaatgcatgttgccagattaccttacagaaagcttagatca 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 561 aaaggcatcattgaggctttaatgcatgttgccagattaccttacagaa-gctcagatca 619
Query: 421 acttctgaacagtagaaactttcaggttcccatatgtgaaaactcactattctccattag 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 acttctgaacagtagaaactttcaggttcccatatgtgaaaactcactattctccactag 679
Query: 481 cagtcaaaacttcttaagcaatttcaagactacagaggagttgcagagtatagtgttaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 cagtcaaaacttcttaagcaatttcaagactacagaggagttgcagagtatagtggtaca 739
Query: 541 cactatagcctcagcatttaagaggcggga 570
|||||||||||||||||||| |||||||||
Sbjct: 740 cactatagcctcagcatttaggaggcggga 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
