BAC Information

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BAC

Clone NameMSMg01-345M22
Chromosome12 (Build37)
Map Location 112,936,079 - 113,110,318
singlet/doubletdoublet
Overlap geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik
Downstream geneLOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345M22.T7 (MSMg01no345_m22.b1)MSMg01-345M22.TJ (MSMg01no345_m22.g1)
ACCAG458543AG458544
length789744
length of high quality
(start - end)
369 (55 - 423)468 (82 - 549)
definitionCHROMAT_FILE: MSMg01no345_m22.b1 PHD_FILE: MSMg01no345_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:20 2005CHROMAT_FILE: MSMg01no345_m22.g1 PHD_FILE: MSMg01no345_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,109,973 - 113,110,318)(112,936,079 - 112,936,546)
sequence
NAAAATAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAGCCTTCTATAATATGGATTCTGTGGGTCAAACTC
AAATCAGGCTTTGTGGCAAGCACCTTAACCAGCTGAGCCATCTTGTTGGC
CCATCAGTAACTGTTTTAATGTTTTTGGTTTTGGTGTGTGTTGTGTTGTA
TTTTTGGTGCTGGGGATGGAACACAGGACCTTACACATGCTCAGTGCACA
CTCTACCAATGAGCTGGATACCTCAGCATCAGTTAAGCAGCTCTTCTCTG
CTCTGATAACATCAGGAAGACAGCATGTGGTGTAAGTAGTAAGTCCTCCA
CAAATAGTATTAAACTGAGAATAGTAAAATCCTGGCTTTTATATTGAAAG
ACTTGTTAGCAGTCAGGCAAAGAACATTCTCACAGATAATATGATTGCAT
GGAATTCTGCGAAATGTACATCCTAAAGAAAAATATGCTGGNCGGGGTGT
TGCATGGCTTTTAACCCCACCACTTGGTAGGCAAAAATACGCACATTTCC
TAAATTCAGGACCAACCCGTCTATAATAATTAAATTCCCAAACAGTGAAG
TCTTACATAATAAACCCCCCTCTCCACATACTTTTTTCTTCTATTCACCA
CAAAAACCCTCCATCTCTTCCTCTTATACTCATACTTTCCACTTTAAACC
CTTGGCTGTTTAACTCATCCACCCACTCGCCCTAATCACATATTCTTCCA
CTATCATTAACTCTCAAACTTCTATATTCTACTTCACCG
TTTTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCGCACATCTTGCACCTTAAGCACACAC
CCAAACCCAGCTTATGTGACCTCATCCCATGACTAACTTTTCCTGTCGTC
AGGCAGGCCAAACCCCACAACTGCACTTTAGTCCCTAAGGCCAGCCTCCT
TGCTGTCTGCCTGTCTATCTCAGTCCTGCTCTGCCTCTTCTGTTGGTCCT
ATCTTCCTGGCCCCACACATGGGGACAGTTAGGACAGTGTTCTGTCCTAA
AACACCCACATTCTCGCACTGGTCATCCAGAGTCCACCTTTGACCCAGGC
CCTTCTAGCTTTTGATTTGTACCTCTGAGATCTCCCAGGCTCTGAGAAGT
AAGCCTTGCTCTGAGCTTCCCATGGCTGTTCCCACTGGAATGCCTCCCTC
TCTGGGGGATTTTTGTTAAGGAAGTGTCCCTAAAGTAGCCTTCACTGCCT
TCCCTGTAAAGGTTGCCCCTTTCCCCTTTCTCCTGGTACGTTTGTGGCAT
CAAGGTTGGAAAGTCAGGAACTGTGACTGCCTTCTTAGAGTACCTGCCTC
ACTGCTCTGACACAATACTTCATGCCTGCTAAGATTCAAGGGTTTTGAAT
ATTTGCATCCTTGGAAAATAAGTTATAAGACAAACCATCTTATCGTCCTC
TATGACATAATGTTATTCTTCCTCTACATGATTTTGTCATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_m22.b1 MSMg01no345_m22.b1 CHROMAT_FILE:
MSMg01no345_m22.b1 PHD_FILE: MSMg01no345_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:20 2005
         (369 letters)



>mm_chr12_113109550_113110318
          Length = 769

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Minus

                                                                       
Query: 24  tatggattctgtgggtcaaactcaaatcaggctttgtggcaagcaccttaaccagctgag 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tatggattctgtgggtcaaactcaaatcaggctttgtggcaagcaccttaaccagctgag 710

                                                                       
Query: 84  ccatcttgttggcccatcagtaactgttttaatgtttttggttttggtgtgtgttgtgtt 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ccatcttgttggcccatcagtaactgttttaatgtttttggttttggtgtgtgttgtgtt 650

                                                                       
Query: 144 gtatttttggtgctggggatggaacacaggaccttacacatgctcagtgcacactctacc 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtatttttggtgctggggatggaacacaggaccttacacatgctcagtgcacactctacc 590

                                                                       
Query: 204 aatgagctggatacctcagcatcagttaagcagctcttctctgctctgataacatcagga 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aatgagctggatacctcagcatcagttaagcagctcttctctgctctgataacatcagga 530

                                                                       
Query: 264 agacagcatgtggtgtaagtagtaagtcctccacaaatagtattaaactgagaatagtaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agacagcatgtggtgtaagtagtaagtcctccacaaatagtattaaactgagaatagtaa 470

                                                         
Query: 324 aatcctggcttttatattgaaagacttgttagcagtcaggcaaaga 369
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aatcctggcttttatattgaaagacttgttagcagtcaggcaaaga 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no345_m22.g1 MSMg01no345_m22.g1 CHROMAT_FILE:
MSMg01no345_m22.g1 PHD_FILE: MSMg01no345_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:20 2005
         (468 letters)



>mm_chr12_112935879_112936746
          Length = 868

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcaccttaagcacacacccaaacccagcttatgtgacctcatcccatgactaactttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcaccttaagcacacacccaaacccagcttatgtgacctcatcccatgactaactttt 260

                                                                       
Query: 61  cctgtcgtcaggcaggccaaaccccacaactgcactttagtccctaaggccagcctcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtcgtcaggcaggccaaaccccacaactgcactttagtccctaaggccagcctcctt 320

                                                                       
Query: 121 gctgtctgcctgtctatctcagtcctgctctgcctcttctgttggtcctatcttcctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtctgcctgtctatctcagtcctgctctgcctcttctgttggtcctatcttcctggc 380

                                                                       
Query: 181 cccacacatggggacagttaggacagtgttctgtcctaaaacacccacattctcgcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacacatggggacagttaggacagtgttctgtcctaaaacacccacattctcgcactg 440

                                                                       
Query: 241 gtcatccagagtccacctttgacccaggcccttctagcttttgatttgtacctctgagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcatccagagtccacctttgacccaggcccttctagcttttgatttgtacctctgagat 500

                                                                       
Query: 301 ctcccaggctctgagaagtaagccttgctctgagcttcccatggctgttcccactggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcccaggctctgagaagtaagccttgctctgagcttcccatggctgttcccactggaat 560

                                                                       
Query: 361 gcctccctctctgggggatttttgttaaggaagtgtccctaaagtagccttcactgcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctccctctctgggggatttttgttaaggaagtgtccctaaagtagccttcactgcctt 620

                                                           
Query: 421 ccctgtaaaggttgcccctttcccctttctcctggtacgtttgtggca 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctgtaaaggttgcccctttcccctttctcctggtacgtttgtggca 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)