Query= MSMg01no346_m04.b1 MSMg01no346_m04.b1 CHROMAT_FILE:
MSMg01no346_m04.b1 PHD_FILE: MSMg01no346_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:32 2005
(521 letters)
>mm_chr12_60786442_60787360
Length = 919
Score = 847 bits (438), Expect = 0.0
Identities = 481/518 (92%), Gaps = 36/518 (6%)
Strand = Plus / Plus
Query: 4 ggaattcttcatctaccatgagcaatgaatatggaaatataaaaaaaaataggatacagc 63
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattcttcatctaacatgagcaatgaatatggaaatat--aaaaaaataggatacagc 261
Query: 64 aaaaagtctgagttcactctgataaattgctgaaagatggtagattttcacattgcatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaaagtctgagttcactctgataaattgctgaaagatggtagattttcacattgcatat 321
Query: 124 ctgtgtcttcaagatgtaaaaggatgttaaactacaaggtgttcaccaagtctcatgctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgtgtcttcaagatgtaaaaggatgttaaactacaaggtgttcaccaagtctcatgctt 381
Query: 184 ttaggaaaaataaggatagctcagttggaataatagaattctgctatagtacagcattaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaggaaaaataaggatagctcagttggaataatagaattctgctatagtacagcattaa 441
Query: 244 aaaaagattcttttctttttatgggattaaaattgtgtcagttcccccttctctttcctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaaagattcttttctttttatgggattaaaattgtgtcagttcccccttctctttcctc 501
Query: 304 ctttcaaaccatctcatatagctgctttagctcttcttcaaattcatggccttagcctgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctttcaaaccatctcatatagctgctttagctcttcttcaaattcatggccttagcctgg 561
Query: 364 agaggtggctcagtggttaagagcactgactattcttccagaggtcctgtgttgaattcc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaggtggctcagtggttaagagcactgactattcttccagaggtcctgtgtt------- 614
Query: 424 cagcaaccacatggtagctcctgtgttcaattcccagcaaccacatggtagctcacaacc 483
|||||||||||||||||||||||||||||||||
Sbjct: 615 ---------------------------caattcccagcaaccacatggtagctcacaacc 647
Query: 484 atttgtaatgggatcttatgccctcttctggtgcgtct 521
||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atttgtaatgggatcttatgccctcttctggtgcgtct 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 919
Length adjustment: 10
Effective length of query: 511
Effective length of database: 909
Effective search space: 464499
Effective search space used: 464499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_m04.g1 MSMg01no346_m04.g1 CHROMAT_FILE:
MSMg01no346_m04.g1 PHD_FILE: MSMg01no346_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:32 2005
(466 letters)
>mm_chr12_60932022_60932887
Length = 866
Score = 625 bits (323), Expect = 0.0
Identities = 338/343 (98%)
Strand = Plus / Minus
Query: 117 tgtatcttgtaaacttacccaatgtgttaactagttctaaagctaattttaattctgtca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tgtatcttgtaaacttacccaatgtgttaactagttctaaagctaattttaattctgtca 807
Query: 177 gtgctttgatttataaaattatgacctctgcacatggaattagttttatcttttgcttag 236
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtgttttgatttataaaatcatgacctctgcacatggaattagttttatcttttgcttag 747
Query: 237 caatcagggtatgacttgtttgttccaatctaggttgaaccttcagtagatgatgaaaca 296
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 caatcggggtatgacttgtttgttccaatctaggttgaaccttcagtagatgatgaaaca 687
Query: 297 actgggagaggagggcatctgtgtacagtgctgagctcagacaaaagcactcggtccttc 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 686 actgggagaggagggcatctgtgtactgtgctgagctcagacaaaagcactcggtccttc 627
Query: 357 cagggaacattcagtccaatttgtgctattttcgtaggtgccaaatcatgagacagagca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagggaacattcagtccaatttgtgctattttcgtaggtgccaaatcatgagacagagca 567
Query: 417 agcagttgctctctttctagtttttgtgggtttttgttttttt 459
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 agcagttgctctctttctagtttttgtggttttttgttttttt 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
