BAC Information

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BAC

Clone NameMSMg01-346N04
Chromosome12 (Build37)
Map Location 32,731,331 - 32,731,841
singlet/doubletsinglet
Overlap genePrkar2b
Upstream gene9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1
Downstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346N04.T7 (MSMg01no346_n04.b1)MSMg01-346N04.TJ (MSMg01no346_n04.g1)
ACCAG459317AG459318
length725736
length of high quality
(start - end)
506 (41 - 546)427 (72 - 498)
definitionCHROMAT_FILE: MSMg01no346_n04.b1 PHD_FILE: MSMg01no346_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:36 2005CHROMAT_FILE: MSMg01no346_n04.g1 PHD_FILE: MSMg01no346_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCGCATTTCCCAGTAGGGCTATGACAATGGCCTCCTCCTAAAGGTAGTC
AGAGAACATCCTCAAACAATGAAGATGTCACTGCCGCTCCAGCCTTAAAC
CAAGGAAGCCTTTCAACTTCTCCATCACAGCACACCATTTCACCTCCTCC
AGAGCAAACAGCTAGCTAAAGATCTCTGGCATCCTGCGCTGTCTTCTTCT
TCACACTAATGCCACAGCTTGTCCCTGGTCAGTGTGGTTACCAATCCCTA
GCACATATGCATACACATTAGAAAGAGTAAATCTAGATGAACTGTGCTGA
TGAAAAAGTATGGACAGGAGGTGCTCCCTGAGAGATGCTCCCTGAGAGGA
GATGTTCCCTGAGAGGAGGTGCTCCCTGAGAGGTGCTCCCTGAGAGGAGA
TGCTCCCTGAGAGGTGCTCCTTGAGAGGAGGTGCTCCCTGAGAGGAGATG
CTCCCTGAGAGGTGCTCCCTGAGAGGAGATGCTCCCTGAGAGGTGCTCCT
TGAGAGGAGGTGCTCCTTGAGAGGAGATGCTCCCTGAAAGGTGCTCCCTG
GACTCTATTGAATTTTTTTTTCTAACAATGAAGCTGATAATCACACAGGC
ATAAGTTGGTCGAACTGACACATTACAGCCCCGTTTGGAAAATTCCACAC
ATTTACAGGAGCCCAAACCCACTCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTNAAAAGAATGAATTTAT
GAAATTCCTAACCTAAATGGATGGACCCTGGAGGGGTTTCATTCGGAGTG
GGGGAAAACCATTTTCCAAAGGGAAACTTTCCCAAAATTGGTTACCCTCC
GGTTAAAGGGGGAAAATTAACCCCAAAATCCTTATGGAAATCCTCTAGAA
AATAAAAATACCCTTTTTTTTTTAAACACCTTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_n04.b1 MSMg01no346_n04.b1 CHROMAT_FILE:
MSMg01no346_n04.b1 PHD_FILE: MSMg01no346_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:36 2005
         (506 letters)



>mm_chr12_32731212_32732123
          Length = 912

 Score =  779 bits (403), Expect = 0.0
 Identities = 481/515 (93%), Gaps = 20/515 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcgcatttc---ccagtagggctatgacaatggcctcctcctaaaggtagtca 61
           ||||||||||||   |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaattcagcgca---caaaccagtagggctatgacaatggcctcctcctaaaggtagtca 176

                                                                       
Query: 62  gagaacatcctcaaacaatgaagatgtcactgccgctccagccttaaaccaaggaagcct 121
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 177 gagaacatcctcaaacaatgaagatgtcgctgccgctccagccttaaaccaaggaagcct 236

                                                                       
Query: 122 ttcaacttctccatcacagcacaccatttcacctcctccagagcaaacagctagctaaag 181
           ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 237 ttcaactgctccatcacagcacaccatgtcacctcctccagagcaaacagctagctaaag 296

                                                                       
Query: 182 atctctggcatcctgcgctgtcttcttcttcacactaa-tgccacagcttgtccctggtc 240
             ||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 297 gcctctggcatcctgtgctgtcttcttcttcacactaact-cctcagcttgtccctggtc 355

                                                                       
Query: 241 agtgtggttaccaatccctagcacatatgcatacacattagaaagagtaaatctagatga 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 356 agtgtggttaccaatccctagcacatatgcatacacgttagaaagagtaaatctagatga 415

                                                                       
Query: 301 actgtgctgatgaaaaagtatggacaggaggtgctccctgagag---atgctccctgaga 357
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 416 actgtgctgatgaaaaagtatggacaggaggtgctccctgagaggtgatgctccctgaga 475

                                                                       
Query: 358 ggagatgttccctgagaggaggtgctccctgagagg---tgctccctgagaggagatgct 414
           |||| || ||||||||||||| ||||||||||||||   |||||||||||||||| ||||
Sbjct: 476 ggaggtgctccctgagaggagatgctccctgagaggagatgctccctgagaggaggtgct 535

                                                                       
Query: 415 ccctgagagg---tgctccttgagaggaggtgctccctgagaggagatgctccctgagag 471
           ||||||||||   |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 536 ccctgagaggaggtgctccctgagaggaggtgctccctgagaggaggtgctccctgagag 595

                                              
Query: 472 g---tgctccctgagaggagatgctccctgagagg 503
           |   |||||||||||||||||||||||||||||||
Sbjct: 596 gagatgctccctgagaggagatgctccctgagagg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 912
Length adjustment: 10
Effective length of query: 496
Effective length of database: 902
Effective search space:   447392
Effective search space used:   447392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)