Query= MSMg01no347_e23.b1 MSMg01no347_e23.b1 CHROMAT_FILE:
MSMg01no347_e23.b1 PHD_FILE: MSMg01no347_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:14 2005
(245 letters)
>mm_chr12_81049861_81050506
Length = 646
Score = 437 bits (226), Expect = e-127
Identities = 241/246 (97%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 tgggccccattgagccagctggccttcccacgcaagccgatgctctcagctgtgactgcc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 446 tgggccccattgagccagctggccttcccacgcaagccgatgcactcagctgtgactgcc 387
Query: 61 cgttcccgggtcagcctgctccagctcacccttgacggagaacaccggctccctgacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgttcccgggtcagcctgctccagctcacccttgacggagaacaccggctccctgacagc 327
Query: 121 ttcggctgctttctgttccaagttgcacagagcatcatgaagactttttt-caaaacgtg 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 326 ttcggctgctttctgttccaagttgcacagagcatcatgaagactttttttcaaaacgtg 267
Query: 180 tatgtcagccactcacagcagtttctgcggcctcggctgccatgatctttttatttattt 239
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 266 taggtcagccactcacagcagttcctgcggcctcgactgccatgatctttttatttattt 207
Query: 240 ggcctg 245
||||||
Sbjct: 206 ggcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no347_e23.g1 MSMg01no347_e23.g1 CHROMAT_FILE:
MSMg01no347_e23.g1 PHD_FILE: MSMg01no347_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:15 2005
(495 letters)
>mm_chr12_80867269_80868163
Length = 895
Score = 942 bits (487), Expect = 0.0
Identities = 493/495 (99%)
Strand = Plus / Plus
Query: 1 acatgaagtccagttcagatcctccttgcaggaaagtcttagagggtaaaggaatgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgaagtccagttcagatcctccttgcaggaaagtcttagagggtaaaggaatgtttc 260
Query: 61 tcttgaaatagagcaagctaaagcggactggatacgaaaggctgagctctcccagattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgaaatagagcaagctaaagcggactggatacgaaaggctgagctctcccagattcc 320
Query: 121 cttttggctgtggatgttcacaaggagagagggcaaaggaatgtcatatatgccatgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttggctgtggatgttcacaaggagagagggcaaaggaatgtcatatatgccatgaga 380
Query: 181 ttaataaggaaaactgagttacgttgcatagcaatctaaacgaagatctgccagttcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaataaggaaaactgagttacgttgcatagcaatctaaacgaagatctgccagttcaac 440
Query: 241 taaaccaagaccgctcataaacaatagaggagcgctgtgcccttctgccaaggatgggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaccaagaccgctcataaacaatagaggagcgctgtgcccttctgccaaggatgggag 500
Query: 301 aggtgtggttctttttgagtagtggctttgttgccacaccatgcatcttcttgttaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtgtggttctttttgagtagtggctttgttgccacaccatgcatcttcttgttaatgt 560
Query: 361 gtaactgcctttgtttgcccattggggatcactttctgctaaggctgaaggactccatgc 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gtaactgcctttgtttgcccattggggatcactttctgctaaagctgaaggactccatgc 620
Query: 421 tgactcttatttagtccccagttccttagtgttggccttctctaactcatcttttgttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgactcttatttagtccccagttccttagtgttggccttctctaactcatcttttgttgt 680
Query: 481 gatggagctttgagt 495
|||||||| ||||||
Sbjct: 681 gatggagccttgagt 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
