BAC Information

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BAC

Clone NameMSMg01-347F09
Chromosome12 (Build37)
Map Location 85,558,523 - 85,694,639
singlet/doubletdoublet
Overlap geneC130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1
Downstream geneCoq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347F09.T7 (MSMg01no347_f09.b1)MSMg01-347F09.TJ (MSMg01no347_f09.g1)
ACCAG459702AG459703
length752764
length of high quality
(start - end)		569 (73 - 641)544 (74 - 617)
definitionCHROMAT_FILE: MSMg01no347_f09.b1 PHD_FILE: MSMg01no347_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:16 2005CHROMAT_FILE: MSMg01no347_f09.g1 PHD_FILE: MSMg01no347_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,558,523 - 85,559,091)(85,694,190 - 85,694,639)
sequence
NNCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACTGTACTTCAGGCCCAGATCTGTCCTAAGCATTTGC
AATGCAAATCTGCGTTTTGTTCACCACCACCAAGAGCTTGCACAATAGCG
TGTGCATAAACATCCACGCCAACAAAGCCTGACTGTGCAATCACGCAGTA
ATTACAGACCGGCAGGAAGCTGCTGCTAGGGACTGCACTATTCAAGCTCT
AGACATCCCATCTCCAACTGTCCACGGCCTGTACACACATTCCTGCACAC
ATCGCCCTGTCCCCGCCGCTGCTACAGCTTCAGGCACAAACCAAGGAGCC
CTGGCGCCAGCTGCTGGGCCACGCCAAGACCCCTGCAACTATGCAAAGAT
GTCATAAACTTCTCAGCTGTTCTTTAAAGACCCAGAAGCACGAGGCTACC
GAGGGCGGGCGGCGGGGAACCATCATCAAAGTTCCCAGGCAAACTCCTGC
AGCCCTAGCCGTTTTAGAACACAGAAAAGAACAAGATGCCACGGAGTCCA
CTGGAAGCGGCTTTCTGGGTTTTATATAGAAAACACTCACATATGTACGT
GGGTGTGCTGACAGTTTTTATGGCTAAATTGCAAAGTGTTAGGTCCNANA
NAGCTTACTGTTGGGTTCGGCGCTTGGNNNNTTAGGTAGGAAAAGTGTAT
AGTCGGTAAGGGGTTCGGTTCCATGATGCCTGGTGGTACACTCTGTTTTT
GC

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGATGGGGCTGGACTATGTGCTATC
ATCCTTTCAGTCTGTGCGGGACACAGGGTTAAGCTAGACAGGCCCTAGAA
AATTTACAACGTAACATGCAGTCTGAAAGGTGGGATTTTTCAGGGTCATT
ACCCTGTGTTATGAGCAGGGCAAGCACAGAGGACAATGACAGCACAGGGA
AGCCGAGGGGCATGACTGGTCTCACATCTTTTGGGACACGTCTAAAGTAA
AACCTGAGGAATAAGGAGGAAGGGGCTGGGAGATGGCTCCGATGGTAAAG
CCCCTGCTGGGCAGGCATGGAGACCAGCATTCAGGTCCCCAGCACCCGAG
TAAAAGTGTGCCAGTGTGCCAGTGTGCCAGCAAGTCTTGCACTTCCAGGT
GAGCAGTGGGCAGAGAGAAGCGCTTCCTCTGACCTGGGGACAGCCAGGCT
AGGCAGTAAGGGACTTCCAGACTCAGTGAGCCGCTGGGGCCGGCAGATGG
CCGAGTGGACAAATGTCCTTGCTGACAAGCCTGCCGACCTCAGTTCAATC
CCAGGACCCACACAGTAGAATGTGAGAACTGACTCTTGCAAGTTACCCTC
GACTTCCACACACATACTGTGAGAACTGCCCTTCCAAAGGAGAAAGCGGA
ACAAGTCAGACTAAGGCTAGAGAGAAAAGAATATTCTCGAACACAAATGT
GTATATCTGTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_f09.b1 MSMg01no347_f09.b1 CHROMAT_FILE:
MSMg01no347_f09.b1 PHD_FILE: MSMg01no347_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:16 2005
         (569 letters)



>mm_chr12_85558323_85559291
          Length = 969

 Score = 1085 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcccagatctgtcctaagcatttgcaatgcaaatctgcgttttgttcaccaccacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcccagatctgtcctaagcatttgcaatgcaaatctgcgttttgttcaccaccacca 260

                                                                       
Query: 61  agagcttgcacaatagcgtgtgcataaacatccacgccaacaaagcctgactgtgcaatc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcttgcacaatagcgtgtgtataaacatccacgccaacaaagcctgactgtgcaatc 320

                                                                       
Query: 121 acgcagtaattacagaccggcaggaagctgctgctagggactgcactattcaagctctag 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcagtaattacagaccggcagaaagctgctgctagggactgcactattcaagctctag 380

                                                                       
Query: 181 acatcccatctccaactgtccacggcctgtacacacattcctgcacacatcgccctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcccatctccaactgtccacggcctgtacacacattcctgcacacatcgccctgtcc 440

                                                                       
Query: 241 ccgccgctgctacagcttcaggcacaaaccaaggagccctggcgccagctgctgggccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgccgctgctacagcttcaggcacaaaccaaggagccctggcgccagctgctgggccac 500

                                                                       
Query: 301 gccaagacccctgcaactatgcaaagatgtcataaacttctcagctgttctttaaagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaagacccctgcaactatgcaaagatgtcataaacttctcagctgttctttaaagacc 560

                                                                       
Query: 361 cagaagcacgaggctaccgagggcgggcggcggggaaccatcatcaaagttcccaggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaagcacgaggctaccgagggcgggcggcggggaaccatcatcaaagttcccaggcaa 620

                                                                       
Query: 421 actcctgcagccctagccgttttagaacacagaaaagaacaagatgccacggagtccact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcctgcagccctagccgttttagaacacagaaaagaacaagatgccacggagtccact 680

                                                                       
Query: 481 ggaagcggctttctgggttttatatagaaaacactcacatatgtacgtgggtgtgctgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagcggctttctgggttttatatagaaaacactcacatatgtacgtgggtgtgctgac 740

                                        
Query: 541 agtttttatggctaaattgcaaagtgtta 569
           |||||||||||||||||||||||||||||
Sbjct: 741 agtttttatggctaaattgcaaagtgtta 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_f09.g1 MSMg01no347_f09.g1 CHROMAT_FILE:
MSMg01no347_f09.g1 PHD_FILE: MSMg01no347_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:17 2005
         (544 letters)



>mm_chr12_85694190_85695135
          Length = 946

 Score =  835 bits (432), Expect = 0.0
 Identities = 445/450 (98%), Gaps = 2/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatggggctggactatgtgctatcatcctttcagtctgtgcgggacacagggttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tctgatggggctggactatgtgctatcatcctttcagtctgtgcgggacacagggttaag 391

                                                                       
Query: 61  ctagacaggccctagaaaatttacaacgtaacatgcagtctgaaaggtgggatttttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctagacaggccctagaaaatttacaacgtaacatgcagtctgaaaggtgggatttttcag 331

                                                                       
Query: 121 ggtcattaccctgtgttatgagcagggcaagcacagaggacaatgacagcacagggaagc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggtgattaccctgtgttatgagcagggcaagcacagaggacaatgacagcacagggaagc 271

                                                                       
Query: 181 cgaggggcatgactggtctcacatcttttgggacac--gtctaaagtaaaacctgaggaa 238
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 270 cgaggggcatgactggtctcacatcttttgggacacatgtctaaagtaaaacctgaggaa 211

                                                                       
Query: 239 taaggaggaaggggctgggagatggctccgatggtaaagcccctgctgggcaggcatgga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 taaggaggaaggggctgggagatggctccgatggtaaagcccctgctgggcaggcatgga 151

                                                                       
Query: 299 gaccagcattcaggtccccagcacccgagtaaaagtgtgccagtgtgccagtgtgccagc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaccagcattcaggtccccagcacccgagtaaaagtgtgccagtgtgccagtgtgccagc 91

                                                                       
Query: 359 aagtcttgcacttccaggtgagcagtgggcagagagaagcgcttcctctgacctggggac 418
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 90  aagtcttgtacttccaggtgagcagtgggcagagagaagcacttcctctgacctggggac 31

                                         
Query: 419 agccaggctaggcagtaagggacttccaga 448
           ||||||||||||||||||||||||||||||
Sbjct: 30  agccaggctaggcagtaagggacttccaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space:   499824
Effective search space used:   499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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