Query= MSMg01no348_b15.b1 MSMg01no348_b15.b1 CHROMAT_FILE:
MSMg01no348_b15.b1 PHD_FILE: MSMg01no348_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:17 2005
(567 letters)
>mm_chr12_31480461_31481427
Length = 967
Score = 1081 bits (559), Expect = 0.0
Identities = 562/563 (99%)
Strand = Plus / Minus
Query: 5 gaattcatgctctcgcccaaccaaccagagaacttcatgatgacatgaactcctacaact 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gaattcatgctcacgcccaaccaaccagagaacttcatgatgacatgaactcctacaact 708
Query: 65 tacctagagcacagagcctgatgcgtctcaccttactagttaccagattattatcttcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tacctagagcacagagcctgatgcgtctcaccttactagttaccagattattatcttcct 648
Query: 125 ttgctttggtacctaattataatataaactagcatgattaaaagcccaaatccagccacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttgctttggtacctaattataatataaactagcatgattaaaagcccaaatccagccacc 588
Query: 185 agagctaccagagggtgagtgtacataagcatacatcccaattcacaatcctccattaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agagctaccagagggtgagtgtacataagcatacatcccaattcacaatcctccattaag 528
Query: 245 tctatgagcaaccactgagtgtgtaagcaagcccaccatgttcggagcaaccatgagtat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctatgagcaaccactgagtgtgtaagcaagcccaccatgttcggagcaaccatgagtat 468
Query: 305 tctcaatgacatcagagagcagcaccaggctccttccagcaatgacccattccttgccag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctcaatgacatcagagagcagcaccaggctccttccagcaatgacccattccttgccag 408
Query: 365 gaggaagtagaaccctgatttccagcacctatacggttttaaacttacaggaaatcattg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaggaagtagaaccctgatttccagcacctatacggttttaaacttacaggaaatcattg 348
Query: 425 ggtttgaggtgatagcttctttggcttggtattctatttgtggggcttatcttctctgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggtttgaggtgatagcttctttggcttggtattctatttgtggggcttatcttctctgtt 288
Query: 485 ggaaaaacctatggtctgcagaaattttgttgaatacttgcgtcatgatcagtctattct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggaaaaacctatggtctgcagaaattttgttgaatacttgcgtcatgatcagtctattct 228
Query: 545 gttgctgaggtgcatgcatgtta 567
|||||||||||||||||||||||
Sbjct: 227 gttgctgaggtgcatgcatgtta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_b15.g1 MSMg01no348_b15.g1 CHROMAT_FILE:
MSMg01no348_b15.g1 PHD_FILE: MSMg01no348_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:17 2005
(468 letters)
>mm_chr12_31374074_31374941
Length = 868
Score = 876 bits (453), Expect = 0.0
Identities = 465/469 (99%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 1 cctaagttcttgtatatttaaaacttgaagagaaactctgggggaactaattgttctcct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 200 cctaagttcttgtatatttaaaacttgaagagaaactctgggagaactaattgttctcct 259
Query: 61 tggaatatctttcctcgagtttctatgacaccttgagttatgtcacacaccaatcttgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggaatatctttcctcgagtttctatgacaccttgagttatgtcacacaccaatcttgcc 319
Query: 121 ttactaattccgttgccttgtaaatcatcattggtatgtcactagtggctttgacaatcc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttactaattccattgccttgtaaatcatcattggtatgtcactagtggctttgacaatcc 379
Query: 181 tctttcccctctccctccccttttccttccccc-cccctccctttccctttctctgtttt 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 tctttcccctctccctccccttttccttccccctcccctccctttccctttctctgtttt 439
Query: 240 ttaaattctgtgtcatgctcttgaccatactggttaaaatatatatattaatggtgttga 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 ttaaattctgtgtcatgctcttgaccatactggttaaaatatatagattaatggtgttga 499
Query: 300 ttggcttggaagccttcttagatcatggttctaaagatttttcctagttcactcatggac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttggcttggaagccttcttagatcatggttctaaagatttttcctagttcactcatggac 559
Query: 360 tccaattcaactattttctccacagccagctctacttttccattgaatattttttcacca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaattcaactattttctccacagccagctctacttttccattgaatattttttcacca 619
Query: 420 tattgaccattttcctaactatattcaatatgactgtgaccatttcaat 468
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattgaccattttcctaactatattcaatatgactgtgaccatttcaat 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
