BAC Information

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BAC

Clone NameMSMg01-348L09
Chromosome12 (Build37)
Map Location 89,839,817 - 89,840,292
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348L09.T7 (MSMg01no348_l09.b1)MSMg01-348L09.TJ (MSMg01no348_l09.g1)
ACCAG460742AG460743
length749752
length of high quality
(start - end)		559 (37 - 595)476 (68 - 543)
definitionCHROMAT_FILE: MSMg01no348_l09.b1 PHD_FILE: MSMg01no348_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:06 2005CHROMAT_FILE: MSMg01no348_l09.g1 PHD_FILE: MSMg01no348_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
CTAAAGAAACAGACTTGGAGGAGGAAGCAGCTCATTATGAGAGAAAAAAG
TACCAGCCAGATAAAATGCTAGCTAATCAGTTAAGGAAAAAGCCAAAAGC
GGCTGGTGAAGGCCAGCATGCTGTTCAGCCTCCGGGCAGTCGGCTTCAAG
GTCATAGTGCACTTCTGCCCTATGTGGAGGCCCCGCCCTGCGTAAGGCGT
CAGCCCTGCGCAGAGAGGCGATGGACAGAGAGGCAATGCGCAGACTCGTT
CATTCCCAGAGAGGAACAAAGGAAAATGCAACAGGCATTTCCGGTCTTTG
AAGGAGCCAAGCGGTGGTGGCGCACGCTGTTAATCCTAGCACTTGGGAGA
CAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCACCCTGGAGTT
GTAGATCAGGATTATAAAGGGGAACTTCAGGTTCTCTGTTCTTGTTCTCA
AGTTGTCTTTTCTATATCACAAGGGGACAGAATAGCTCAACTAATAATTT
TGCCAAGCCTACATGGCTGTTTTCCTTCCTCTGGTATTCCTTGAGCTGCC
AGAGAGATTGGTTCTACTAGAAATGATTCTGATTACTTAATAATGGCCTT
AGATTGTTGCCCAATTTTATCTACTACTCATGTAGGGGTAAAACCCTCGT
GGTGTCAGGGCCATTACGGGCTGAAAAATGGAGGGTCCGCATATTTCCC

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGG
GCTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGG
ATATTAGTCCCCTATCTGATTTAAGACCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAGTTTCA
TGAGGTCCCATTTGTCAATCCTCGATCTTAAAACACAAGCCATTGCTGTT
CTATTCAGGAATTTTTTGGGGAACAGTCTTTAGACCATGAAGCTACAGTA
GATATTTTCTGCGCACGCTATCAACATCTGGACATGGATCAGAAGAAGGA
TTTGCAGTCCTTCTTAGCCTGAGGTGTTGGGGTCCTTGACATGTCCTATG
TCAAACAATGTACATTCACATAGGCCTTCAGTTGCTCCAGGCTTCCTCTG
CTCCTCACATGTGGACTCAGGCGTGATCATGCACAATACTTTAGTCTGTG
ACTCAGTAGGTGTGGCTGAAGTTGGGAGTTTGCCTTTTTAATGAGTTTCC
AGGTCTAGGAAGCATATTTGAGACCCTCTTCTCCATAGCCCAGTTAGCTT
CGGGGGGGAGGGAAATTTTTTTTTTTTTTGAACCCTGGAAAGCTGGGGTT
TTCCCTTTTATGGTCTTTTCCGGGGGGAAGGGTTTATTTTGCCGAGAAAG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_l09.g1 MSMg01no348_l09.g1 CHROMAT_FILE:
MSMg01no348_l09.g1 PHD_FILE: MSMg01no348_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:06 2005
         (476 letters)



>mm_chr12_89839617_89840492
          Length = 876

 Score =  913 bits (472), Expect = 0.0
 Identities = 475/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagctctgagccccatcttttaagggggctatttgattttctggagtccaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagctctgagccccatcttttaagggggctatttgattttctggagtccaccct 260

                                                                       
Query: 61  cttgagttctttatatatattggatattagtcccctatctgatttaagacctttcccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattggatattagtcccctatctgatttaagacctttcccaat 320

                                                                       
Query: 121 ctgttggtggtctttttgtcttattgacggtgtcttttgctttgcagaagctttgcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttggtggtctttttgtcttattgacggtgtcttttgctttgcagaagctttgcagtt 380

                                                                       
Query: 181 tcatgaggtcccatttgtcaatcctcgatcttaaaacacaagccattgctgttctattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgaggtcccatttgtcaatcctcgatcttaaaacacaagccattgctgttctattca 440

                                                                       
Query: 241 ggaattttttggggaacagtctttagaccatgaagctacagtagatattttctgcgcacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattttttggggaacagtctttagaccatgaagctacagtagatattttctgcgcacg 500

                                                                       
Query: 301 ctatcaacatctggacatggatcagaagaaggatttgcagtccttcttagcctgaggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatcaacatctggacatggatcagaagaaggatttgcagtccttcttagcctgaggtgt 560

                                                                       
Query: 361 tggggtccttgacatgtcctatgtcaaacaatgtacattcacataggccttcagttgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggggtccttgacatgtcctatgtcaaacaatgtacattcacataggccttcagttgctc 620

                                                                   
Query: 421 caggcttcctctgctcctcacatgtggactcaggcgtgatcatgcacaatacttta 476
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 caggcttcctctgctcctcacatgtggactcaggcttgatcatgcacaatacttta 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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