Query= MSMg01no349_m24.b1 MSMg01no349_m24.b1 CHROMAT_FILE:
MSMg01no349_m24.b1 PHD_FILE: MSMg01no349_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:32 2005
(530 letters)
>mm_chr12_57397038_57397966
Length = 929
Score = 994 bits (514), Expect = 0.0
Identities = 523/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaactgtcttcccatactactccattcgagatatgttcccaatatgctatcta 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaactgtcc-cccatactactccattcgagatatgttcccaatatgctatcta 263
Query: 65 ttattcgtttgtaagttcacagttcttaaataaaatacaagcttccttgggcaggagcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttattcgtttgtaagttcacagttcttaaataaaatacaagcttccttgggcaggagcca 323
Query: 125 ctcagcacaggggtgggtacatgcttggaactgaaaaaaagaaaagtgctgaataaaggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcagcacaggggtgggtacatgcttggaactgaaaaaaagaaaagtgctgaataaaggg 383
Query: 185 ggtggggggaagaccaccggcaagccacatacaatattctggcagcaacttgtgtaacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtggggggaagaccaccggcaagccacatacaatattctggcagcaacttgtgtaacag 443
Query: 245 ggagaatacagttttgcaaatgtgtcttgagatggggcagtgcagcctctactagctgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggagaatacagttttgcaaatgtgtcttgagatggggcagtgcagcctctactagctgct 503
Query: 305 attccaggagcaaccggacccaaacgccaaggagacagtgttgccaagtagtttcttttg 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 attccaggagcaaccggacccaaacgccaaggagacagtgttgccaaatagtttcttttg 563
Query: 365 aaggagtcacctggtgactttgtcctgtaaggctagggcgtggcattgctgactccttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaggagtcacctggtgactttgtcctgtaaggctagggcgtggcattgctgactccttaa 623
Query: 425 cctttgtcctttgaatgggaaagaaaacatccctagggtagccctcaaaataggaagaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctttgtcctttgaatgggaaagaaaacatccctagggtagccctcaaaataggaagaca 683
Query: 485 aaaaaaggagggaggagacagcccggctgccccggcttccttaagg 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaaaaggagggaggagacagcccggctgccccggcttccttaagg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_m24.g1 MSMg01no349_m24.g1 CHROMAT_FILE:
MSMg01no349_m24.g1 PHD_FILE: MSMg01no349_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:32 2005
(518 letters)
>mm_chr12_57571819_57572737
Length = 919
Score = 996 bits (515), Expect = 0.0
Identities = 518/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 1 atgctgatactgaaaacatgctcctagcttctag-tttttttttggatttcaaatcattt 59
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 719 atgctgatactgaaaacatgctcctagcttctagttttttttttggatttcaaatcattt 660
Query: 60 ccattaacaaacagctatttgccctctaataaaatatgtcattatgctttattcacactg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ccattaacaaacagctatttgccctctaataaaatatgtcattatgctttattcacactg 600
Query: 120 cacaaaagaatcactgaaaaatcgccccaatgatggccaataattacacattttgctcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cacaaaagaatcactgaaaaatcgccccaatgatggccaataattacacattttgctcct 540
Query: 180 gtgctagagatgaagaaatctgttcattggggaaagcaggtgccggggcaccaagctaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gtgctagagatgaagaaatctgttcattggggaaagcaggtgccggggcaccaagctaat 480
Query: 240 cgccaatgtgtaccgtggtaattagctgctgcgattgctaaaattaacaattagctaaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cgccaatgtgtaccgtggtaattagctgctgcgattgctaaaattaacaattagctaaca 420
Query: 300 tgcaattctcttctttgcaggctgcagtttactttgtataatccttgcatgttcttagta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgcaattctcttctttgcaggctgcagtttactttgtataatccttgcatgttcttagta 360
Query: 360 attactctgacagcttattatttttattttttctggtttgaacacagctttaacatttgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attactctgacagcttattatttttattttttctggtttgaacacagctttaacatttgc 300
Query: 420 atcgggcaacccgaatgttcaacaggcagaagggagcatctgcttggctaggcgtttttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atcgggcaacccgaatgttcaacaggcagaagggagcatctgcttggctaggcgtttttc 240
Query: 480 tgaggcacacatttggttgttttctgaacttttcattgt 518
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgaggcacacatttggttgttttctgaacttttcattgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
