Query= MSMg01no349_p06.b1 MSMg01no349_p06.b1 CHROMAT_FILE:
MSMg01no349_p06.b1 PHD_FILE: MSMg01no349_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:43 2005
(585 letters)
>mm_chr12_66599395_66600379
Length = 985
Score = 615 bits (318), Expect = e-180
Identities = 562/754 (74%), Gaps = 174/754 (23%)
Strand = Plus / Plus
Query: 5 gaattccagaaatgcacaagaccctccctgggtgttaggtcactctgtagaagtccttgg 64
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaatgcaaaagaccctccctggctgttaggtcactctgtagaagtccttgg 264
Query: 65 gaatgaatttggagtttgctttcacagaaatacctgcctagctccagtcggggccacagt 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 gaatgaatttggagtttgctttcacagaaatgcctgcctagctccagtcggggccacagt 324
Query: 125 cccaaatccaaccatttggaatgtgctt-atcaccaacttatataaaattttgctgatta 183
|| |||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||
Sbjct: 325 ccaaaatccaaccatttagaatgtg-ttcatcaccaacttagataaaattttgctgatta 383
Query: 184 aatctccataagacactgtcctggccctttcagaagctttgcaatgtgatgaggtcccat 243
||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct: 384 aatctccataagacactgtcctgccccttacagaagctttgctatgtgatgaggtcccat 443
Query: 244 ttgt-----c-----------------------gatg----------------------- 252
|||| | ||||
Sbjct: 444 ttgttgattcttgatctttgagcattagcccttgatgttctgttcaggaaaattttccct 503
Query: 252 ------------------------------------------------------------ 252
Sbjct: 504 gtgcccatgtgttcaaggtttttctccactttcttttcttttagattcagtgtatctggt 563
Query: 253 ----------------------------------------------------------ga 254
||
Sbjct: 564 cttatgtggaggtccttgatccacttgaatttgggctttgtacagggagataagaatgga 623
Query: 255 tcaatttgcattcttctacatgtggacctccagctgaaccagcaccatttgttgaaaatg 314
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 624 tcaatttgcattcttctacatgtggacctctagttgaaccagcaccatttgttgaaaatg 683
Query: 315 ctatc-ttttttcaatggatggttttagctcctttgtcaaagatcaaaagaattgacaaa 373
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 ctatccttttttcaatggatggttttagctcctttgtcaaagatcaaaagaattaacaaa 743
Query: 374 cgagacatcataaaattgcaaagcttctgtaagttaaaggacactgtcaataggacaaaa 433
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 tgagacatcataaaattgcaaagcttctgtaagttaaaggacattgtcaataggacaaaa 803
Query: 434 cacagacaacagattggaaaa-gatctttaccaattctacacctcatagagggctaatat 492
||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct: 804 cacagacaacagattggaaaaagatctttaccaattctccaccccatagagggctaatat 863
Query: 493 ccaatatatacaaagaactcaagaagttagactccagagaatcatataaccctagtaaaa 552
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 864 ccaatatatacaaagaactcaagaagttagactccagagaaccaaataaccctagtaaaa 923
Query: 553 a-tggggaacagagctaaacagagaattctcaac 585
| ||||||||||||||||||||||||||||||||
Sbjct: 924 aatggggaacagagctaaacagagaattctcaac 957
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_p06.g1 MSMg01no349_p06.g1 CHROMAT_FILE:
MSMg01no349_p06.g1 PHD_FILE: MSMg01no349_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:43 2005
(572 letters)
>mm_chr12_66671151_66672122
Length = 972
Score = 861 bits (445), Expect = 0.0
Identities = 466/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 1 atcagctctcactacaatctcagtcctttcccaaccttctaattaccatcagccacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcagctctcactacaatctcagtcctttcccaaccttctaattaccatcagccacaaac 413
Query: 61 agcactctcctcccagcttgattgcccttcagacttaatcaaacaatcgcccatcccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agcactctcctcccagcttgattgcccttcagacttaatcaaacaatcgcccatcccttg 353
Query: 121 tcagaaacaaactgtggcctgcgaatgatcggatcagaatcagggggtgtgtttgttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352 tcagaaacaaactgtggcctgcgaatgatcggatcagaatcagggggtgagtttgttaga 293
Query: 181 cacctcgcttcctcttgctccaaatcagttggttcttgatgtcaaggaaaagacttacag 240
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 cacctcacttcctcttgctccaaatcagttggttcttgatgtcaaggaaaggacttacag 233
Query: 241 agtgtgcattttctttcttttttttttttttaactcgggaggcagaggcaggcagatttc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 232 agtgtgcattttctttctttttttttttttt-actcgggaggcagaggcaggcagatttc 174
Query: 301 tgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacagag 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 173 tgagttcgaggccagcctggtctacagagtgagttccagggcagccagggctacacagag 114
Query: 361 tgtgcattttcaatgcactctacagtgagtcttcgaaacagagttctagaaccaacccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tgtgcattttcaatgcactctacagtgagtcttcgaaacagagttctagaaccaacccaa 54
Query: 421 tctggcttttccaccccttctgctacgtctctgaaatagattccatgactgta 473
||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 53 tctggcttttccacctcttctgctacgtctctgaaatagattccacgactgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
