Query= MSMg01no350_n09.b1 MSMg01no350_n09.b1 CHROMAT_FILE:
MSMg01no350_n09.b1 PHD_FILE: MSMg01no350_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:54 2005
(428 letters)
>mm_chr12_96928529_96929359
Length = 831
Score = 756 bits (391), Expect = 0.0
Identities = 420/431 (97%), Gaps = 3/431 (0%)
Strand = Plus / Minus
Query: 1 ccttctgatttgccaaggtggcagcagagcataggaatagctcctttggttcttgaatca 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 631 ccttctgatttgccaaggtggcagcagagcatagcaatagctcctttggttcttgaatca 572
Query: 61 gcaaagctcacaatttaggacatatgcatttccaccgtcctttaaatatccattcttctg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 571 gcaaagctcacaatttaggacatatgcatttccaccgttctttaaatatccattcttctg 512
Query: 121 tgcagttatgcatatgtgtccccagaacctattatcctctatatccttcttctgagaaga 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 511 tgcagttatgcatatgtgtccccagaacctatcatcctctatatccttcttctgagaaga 452
Query: 181 cagtatattaagctcattcttacaaacatatattggttaaccaacaagatgaaaccctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagtatattaagctcattcttacaaacatatattggttaaccaacaagatgaaaccctaa 392
Query: 241 acaggcttcacattgtgattcatgctactggaaacagaattaatccagaaaaggaagagg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acaggcttgacattgtgattcatgctactggaaacagaattaatccagaaaaggaagagg 332
Query: 301 gggtggttattaataaatataatttcattttccagtaatgatgattcacacccataataa 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 331 gggtggttattaataaatataatttcattttccagtaatgatgattcaaaagtataataa 272
Query: 361 agtagtgcaatgagcatatcctcctttctaaaaagctatggg---tgttgttattattat 417
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 271 agtagtgcaatgagcatatcctcctttctaaaaagctatgggtgttgttgttattattat 212
Query: 418 tatcatgattt 428
|||||||||||
Sbjct: 211 tatcatgattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 831
Length adjustment: 9
Effective length of query: 419
Effective length of database: 822
Effective search space: 344418
Effective search space used: 344418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_n09.g1 MSMg01no350_n09.g1 CHROMAT_FILE:
MSMg01no350_n09.g1 PHD_FILE: MSMg01no350_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:54 2005
(493 letters)
>mm_chr12_96758253_96759145
Length = 893
Score = 862 bits (446), Expect = 0.0
Identities = 482/494 (97%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 1 acattttgcatcttcagtatctcagctggcattgggaccttccattctgccctgcccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattttgcatcttcagtatctcagctggcattgggaccttccattctgccctgcccagt 260
Query: 61 actaaaccccatgcttaacttaccctaacaactgctggctctgcctcttccaccttttct 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaaccccatgcttaactcaccctaacaactgctggctctgcctcttccaccttttct 320
Query: 121 tctattgtgtaccttttaatacaagctcaacgtggggctctttctgcatgcatattctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctattgtgtaccttttaatacaagctcaacgtggggctctttctgcatgcatattctgt 380
Query: 181 ctct-taaaatatttccactccttcttccagaatgttccctgagccttggatgggaggat 239
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctaaaaaaaatttccactccttcttccagaatgttccctgagccttggatgggaggat 440
Query: 240 agagatatcccttatagaatcaagcactccaaaatcagtcatttcctatattttgatcat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagatatcccttatagaatcaagcactccaaaatcagtcatttcctatattttgatcat 500
Query: 300 ctgtgactctgcatgaatatccacttactacaaaaagaagtttctctgtcaaaggctgaa 359
|||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgactctgcctgagtatccactcactacaaaaagaagtttctctgtcaaaggctgag 560
Query: 360 aatggcactaattttctggtatgaacattagtatttcaattcatcttatattattatctc 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aatggcactaattttctggtatgaatattagtatttcaattcatcttatattattatctc 620
Query: 420 cctgtgcatacacacagagctgaaggggtttgcagcccataggaagaacaatatcaacga 479
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 cgtgtgcatacacacagagctgaaggggtttgcagcccataggaagaacaatatcaacca 680
Query: 480 accagactccccag 493
| ||||||||||||
Sbjct: 681 aacagactccccag 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
