BAC Information

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BAC

Clone NameMSMg01-351D06
Chromosome12 (Build37)
Map Location 115,051,535 - 115,052,133
singlet/doubletsinglet
Overlap geneIgh
Upstream geneBC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7
Downstream geneLOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351D06.T7 (MSMg01no351_d06.b1)MSMg01-351D06.TJ (MSMg01no351_d06.g1)
ACCAG462631AG462632
length742272
length of high quality
(start - end)		603 (54 - 656)---
definitionCHROMAT_FILE: MSMg01no351_d06.b1 PHD_FILE: MSMg01no351_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:24 2005CHROMAT_FILE: MSMg01no351_d06.g1 PHD_FILE: MSMg01no351_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCATGGGGGCAGATAATCAAAGGAAAACTTTACAGA
AATGTCAGAGATGGCATATGCCCACCTCTCACAAGAAGAGACAGGAAGAT
TACTTGCTCAAGTTCAGTACAAGGAGAAAGTCGTCAGTTTAGAATCAGTG
CAGTGAATGGAACACAGCTGAGTTGAGTTCATTTATGAGTTTACTTTGTT
CAGTGAAGTTCAGCACAGGCAGCTGATATCAGAGAATAAGAAGCAGCCTA
ATGAATAGAGCAGACTCCCATTATTAACTTAAGGCCAAGCTGATCAACTA
ATTAGGAAGATGAAAGAAGCCATATTGAGCCAGTCATCTTAAAGAGTCTT
TTCAAACAGAGCAGCTAAGTTGAAGCAGCTAATGAATGTTCTGAAAGAAC
TAAAAGGTGTGAGCTTATCCAGCAGTATGCCTATGAAAAAACAATTATGT
CAGGTGAATAAAAGGTATTGTTTAGAACCTTGTTGAACCCCAAGAGCATC
TTGCTTCCCTGTGCAGGCTTTCATGGTCCCACAAAACAAACATCTTGGTA
CTCTGTTTCATGAATTCCTTTCCAGTCTGTTACATCTGGAGCACTGCCAG
CAGAGTAAGTTTTGTGCATGGTCTCCTGATCTCCATTGTCTACCTCTGGG
NTTGTCCTACTATCTTTAGTAATGGTGGGATGCCCAGATCAT

CCTTCCTCTTCTTTCCCCTCTTCTTTCCCTTCCCCCTCCCCCCTTTTTCT
TCCTTTTCTTTTTTTTTTCCCTTTCCTTTCCCTTTTTTTTTTTTTCTTTT
TTTTCCCTCCTCCCCTCTTTTTTTTTTCCCTCCTTTTTTTCTTCTCTTCT
CTTCTTTTCCTCCCCCCTTTTCCTTTTTTTTCCCTTCTTTTTTTTCCCTC
CTTCTTCTCTTCCCCTCCTTCTTTNNNNNNNCCCTCTTTTTCTTCCCTTT
CTTCCCTTTNNTTNNNCCNTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_d06.b1 MSMg01no351_d06.b1 CHROMAT_FILE:
MSMg01no351_d06.b1 PHD_FILE: MSMg01no351_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:24 2005
         (603 letters)



>mm_chr12_115051331_115052333
          Length = 1003

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatgggggcagataatcaaaggaaaactttacagaaatgtcagagatggcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatgggggcagataatcaaaggaaaactttacagaaatgtcagagatggcat 264

                                                                       
Query: 65  atgcccacctctcacaagaagagacaggaagattacttgctcaagttcagtacaaggaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcccacctctcacaagaagagacaggaagattacttgctcaagttcagtacaaggaga 324

                                                                       
Query: 125 aagtcgtcagtttagaatcagtgcagtgaatggaacacagctgagttgagttcatttatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtcgtcagtttagaatcagtgcagtgaatggaacacagctgagttgagttcatttatg 384

                                                                       
Query: 185 agtttactttgttcagtgaagttcagcacaggcagctgatatcagagaataagaagcagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtttactttgttcagtgaagttcagcacaggcagctgatatcagagaataagaagcagc 444

                                                                       
Query: 245 ctaatgaatagagcagactcccattattaacttaaggccaagctgatcaactaattagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaatgaatagagcagactcccattattaacttaaggccaagctgatcaactaattagga 504

                                                                       
Query: 305 agatgaaagaagccatattgagccagtcatcttaaagagtcttttcaaacagagcagcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agatgaaagaagccatattgagccagtcatcttaaagagtcttttcaaacagagcagcta 564

                                                                       
Query: 365 agttgaagcagctaatgaatgttctgaaagaactaaaaggtgtgagcttatccagcagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttgaagcagctaatgaatgttctgaaagaactaaaaggtgtgagcttatccagcagta 624

                                                                       
Query: 425 tgcctatgaaaaaacaattatgtcaggtgaataaaaggtattgtttagaaccttgttgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcctatgaaaaaacaattatgtcaggtgaataaaaggtattgtttagaaccttgttgaa 684

                                                                       
Query: 485 ccccaagagcatcttgcttccctgtgcaggctttcatggtcccacaaaacaaacatcttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccccaagagcatcttgcttccctgtgcaggctttcatggtcccacaaaacaaacatcttg 744

                                                                      
Query: 545 gtactctgtttcatgaattcctttccagtctgttacatctggagcactgccagcagagt 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtactctgtttcatgaattcctttccagtctgttacatctggagcactgccagcagagt 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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