BAC Information

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BAC

Clone NameMSMg01-351D07
Chromosome12 (Build37)
Map Location 82,416,156 - 82,557,284
singlet/doubletdoublet
Overlap geneSlc8a3, LOC100042148, EG214321, Hspe1-ps2, Adam4
Upstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, LOC100042143
Downstream gene1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx, Sipa1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351D07.T7 (MSMg01no351_d07.b1)MSMg01-351D07.TJ (MSMg01no351_d07.g1)
ACCAG462633AG462634
length745761
length of high quality
(start - end)		559 (53 - 611)520 (82 - 601)
definitionCHROMAT_FILE: MSMg01no351_d07.b1 PHD_FILE: MSMg01no351_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:24 2005CHROMAT_FILE: MSMg01no351_d07.g1 PHD_FILE: MSMg01no351_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,556,908 - 82,557,284)(82,416,156 - 82,416,675)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGAATCTTACAGTTTTTTCCCCATCCACAAGCTCTTTT
ATTTTTTTCTGTCCCCTCTTACACAAAGTTACTATTCCATAGATAGATAC
ACCTGACCCATTTATATTCTTATACTATTATTGAGAATGATTATACTTGT
GAATGTTATTTGATAAGTTTCAGTGTTACTTTTTAAATTTAATTATTTTA
CTTTTTACTTACTCACTTTATATCCCACTTACTTCTCCCTGCCCCCCAAC
CCGCTCACCACTTTCCACAATCCTTCCCCCCATACCTCCTCCCATTTTCC
TCTGAGTGGTTTGGGGCCCCTTGGATATCCTCCCACCCTGGCACTGCAAG
TTTCTGGGAGGATAGGGCTTCCTCTTCCACTGAGGCCAGACAAGGCAGCC
CAGCTAAAAGAATGCATCCCACAACAGGCAACAGCTTTTGGGATAGTGCC
TGCTCCAGTTGTTCAGAACCCAGATGAAGACCAAGCTGCATATCTACTAC
ATATGTGCTGGCGGGGGCGGGGGTGTGTGTTAGTTCCAGCCCAGCCCGTG
TATGCTCATTGGGTGATGGTTCAGTCTCTGAGAGCCCTAAGGGTCCATGG
CAGTTGACTCTGTTTGGTTTTCTGGGGAAATCCAATTCCCTTGGGGGGTG
GCTTTCTCCCATTCTTCCATAAAAATCCCCTAATTGGTTCCACGG

NNNNTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATTTTCCCATCCATCT
CAATGCCCTTAGGGTGGTCACCCTCTGTCTCAATGATAATTCCTCGGTGT
TTATCTGTGCGGTATTTTTTGTGCATGTATTTGTAGAAGAGCAGTCGCTT
ATCTGCCACCCAAGCCAGCAGGACACACACGGGAAAGAAGAAGAGAGTAA
GGAGGCCTTCCCAAACCTGGACCACACCAGGAGAGAAGACTGCCAGGATC
ATATAGAGCCAAATGTAGGCGAAGATGCTCCAAGCAGCCGTGACGAAGAA
GACTCGCAGGTGCTTGATCTTTCGAGTCTCCCCATCTGGGATCACATAGA
CACAGATGCCAATGATGATGAACATGTTGAAGGCCGCACTGCCAACGATG
GTAGATGGTCCCAGATCACCAGCAATGAACCCGTGACCACACACCTCAAT
TAAAGACAGGAGAATCTCTGGAGCAGAAGAGCCCAGGGCCATCAGGGTCA
GATTGGAGACAGTTTCATTCCATACCCGAATTGTAGTTGTGCTGGTCTCT
CCATTGGGCTTCTTGATGGTCACTTCCCTCTCTTTGGAAGTAATGACTTC
AATAGATGCCATGAATCGGTCAGCAATGATAGACACCCCAAGGAAACATG
TATATCATGGCCCCACAATAAAAAAGGACCCTTGGGAATCTTGTTCCCCA
AGGAAAGGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_d07.b1 MSMg01no351_d07.b1 CHROMAT_FILE:
MSMg01no351_d07.b1 PHD_FILE: MSMg01no351_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:24 2005
         (559 letters)



>mm_chr12_82556908_82557866
          Length = 959

 Score =  714 bits (369), Expect = 0.0
 Identities = 375/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaatcttacagttttttccccatccacaagctcttttatttttttctgtcccc 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 377 gaattcagaatcttacagttttttcctcatccacaagctcttttatttttttctgtcccc 318

                                                                       
Query: 65  tcttacacaaagttactattccatagatagatacacctgacccatttatattcttatact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttacacaaagttactattccatagatagatacacctgacccatttatattcttatact 258

                                                                       
Query: 125 attattgagaatgattatacttgtgaatgttatttgataagtttcagtgttactttttaa 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attattgagaatgattatagttgtgaatgttatttgataagtttcagtgttactttttaa 198

                                                                       
Query: 185 atttaattattttactttttacttactcactttatatcccacttacttctccctgccccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atttaattattttactttttacttactcactttatatcccacttacttctccctgccccc 138

                                                                       
Query: 245 caacccgctcaccactttccacaatccttccccccatacctcctcccattttcctctgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 caacccgctcaccactttccacaatccttccccccatacctcctcccattttcctctgag 78

                                                                       
Query: 305 tggtttggggccccttggatatcctcccaccctggcactgcaagtttctgggaggatagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tggtttggggccccttggatatcctcccaccctggcactgcaagtttctgggaggatagg 18

                            
Query: 365 gcttcctcttccactga 381
           |||||||||||||||||
Sbjct: 17  gcttcctcttccactga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_d07.g1 MSMg01no351_d07.g1 CHROMAT_FILE:
MSMg01no351_d07.g1 PHD_FILE: MSMg01no351_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:24 2005
         (520 letters)



>mm_chr12_82415956_82416875
          Length = 920

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcattttcccatccatctcaatgcccttagggtggtcaccctctgtctcaatgataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcattttcccatccatctcaatgcccttagggtggtcaccctctgtctcaatgataatt 260

                                                                       
Query: 61  cctcggtgtttatctgtgcggtattttttgtgcatgtatttgtagaagagcagtcgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcggtgtttatctgtgcggtattttttgtgcatgtatttgtagaagagcagtcgctta 320

                                                                       
Query: 121 tctgccacccaagccagcaggacacacacgggaaagaagaagagagtaaggaggccttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgccacccaagccagcaggacacacacgggaaagaagaagagagtaaggaggccttcc 380

                                                                       
Query: 181 caaacctggaccacaccaggagagaagactgccaggatcatatagagccaaatgtaggcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacctggaccacaccaggagagaagactgccaggatcatatagagccaaatgtaggcg 440

                                                                       
Query: 241 aagatgctccaagcagccgtgacgaagaagactcgcaggtgcttgatctttcgagtctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgctccaagcagccgtgacgaagaagactcgcaggtgcttgatctttcgagtctcc 500

                                                                       
Query: 301 ccatctgggatcacatagacacagatgccaatgatgatgaacatgttgaaggccgcactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ccatctgggatcacatagacacagatgccaatgatgatgaacatgttgaaggctgcactg 560

                                                                       
Query: 361 ccaacgatggtagatggtcccagatcaccagcaatgaacccgtgaccacacacctcaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaacgatggtagatggtcccagatcaccagcaatgaacccgtgaccacacacctcaatt 620

                                                                       
Query: 421 aaagacaggagaatctctggagcagaagagcccagggccatcagggtcagattggagaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagacaggagaatctctggagcagaagagcccagggccatcagggtcagattggagaca 680

                                                   
Query: 481 gtttcattccatacccgaattgtagttgtgctggtctctc 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttcattccatacccgaattgtagttgtgctggtctctc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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