BAC Information

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BAC

Clone NameMSMg01-352F09
Chromosome12 (Build37)
Map Location 47,602,299 - 47,602,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F09.T7 (MSMg01no352_f09.b1)MSMg01-352F09.TJ (MSMg01no352_f09.g1)
ACCAG463487AG463488
length761767
length of high quality
(start - end)
376 (52 - 427)341 (82 - 422)
definitionCHROMAT_FILE: MSMg01no352_f09.b1 PHD_FILE: MSMg01no352_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:50 2005CHROMAT_FILE: MSMg01no352_f09.g1 PHD_FILE: MSMg01no352_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTTTTTACGTCTATATTTATTTTTAAATTAGATTATTT
GATTTTTTAGTATCTAGATTCTTGAGTTCTTTGTACATTTTGGACGTTAG
CCCTTTATCAGATGTAGAGTTGGGGAAAACCTTTACACACTCTTTCGGCT
GCCATTTTGTTAAATGATGGTTTTCTTCTCCTTACAAAAGCTTTTCAGTT
TCATGTCGTTTCATTAATTAGTTGTTGATCTTAGTCCCTGTGCTATCAGT
GTCTTATTCAGGACGTTGTATTATGTGAAAACATGTTCAAGGCTATCTGC
CATTTTTAAGTCTATCAGGTTCATTTTGTCTGGCTCCATGTTGCGGATTT
TTATCCAATTGGATTTGAGATTTGTGCAGGCCGATAAACATGTACGTATT
TGCATTCTTCTATACGTAGAATTCCAGTTAGACCGCCTCCATTCTCCCAT
ACGCCTTGCCTTTTCTCTCCTGTGCACTCCTTTTCTTCCCCCCCTCTTTC
CTTTCTTCGTTTTTACGCGTTTTGAACTTCTCCCCACTTTTTTCTTCTCT
TTCCCCCGCCCCCACTTCCCCTATCCCTTTGTTTACAAATTCGCTTCTCC
CTTTACCCCCTTCCCTTTTTGCTTTTTTATCCCCATCCCTCTTTTTTTCT
ATTCTTCTCCTTTTTGCCCCCTCCCTCTCCTTTATTCTCTTCTCTCCCCG
TTCCTCTAATT
NTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGATCTTCAGTCGCTTTA
CAATCACAGATCTCCATATATTAAGAACCATCATAAGAGCATATGCAGAA
TGGAAGGGATCTGTAACTAGAAAAAAAAAAAGTTCCCTTTCCCAAGGATC
ATTTGACTGAGAAATGCTTAAAATGTCCATTCTCAGCATCATGGCCCAAT
TCCTTGCTAATGCAGGAGGCATTCCGTGCTGGTGGGTGTTGGGAACTAGA
TTGTTTCTCTAAAATCCATGTCTGGGGTCTTTGCGCCTATGCCCAGGTAA
TTCTGGATGCCATTCTGTTTACAGATAGAGTTGCACAGAAGTAACGAAGA
AAGCAGTCCTTAGGGGAGGACTCTAGCGCCTGGTGCCCTTATAGCAAGAG
ACGTTTAGCAGATACCTTTGCCGAAGGGAATGCTTTGCAATGATGCGCGC
CCCCAGCAATTCTTTTTCTCCCCCCTATTTCTTTTATTTACCCCCCTTCT
TCTTTTCCCACTCCTTCCTTATCCGCCCCCTTTTCTCCTATCTCCTCCTT
TCCTCCTCTCTTCCCTTTTCCCCCCCCCTCCCCACCATTCTCCTACTTCC
CCCCCTTTTTCTTTTCCCCCCTTTTACTTCTTTTTATTATTACCCTCTTT
TTATATATTACCCTTCCTATCCTCCCCCCCCCTTTCAGCCCGTTTCTTCC
CCTTTTTCTATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f09.g1 MSMg01no352_f09.g1 CHROMAT_FILE:
MSMg01no352_f09.g1 PHD_FILE: MSMg01no352_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:50 2005
         (341 letters)



>mm_chr12_47602096_47602836
          Length = 741

 Score =  615 bits (318), Expect = e-180
 Identities = 333/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   atcttcagtcgctttacaatcacagatctccatatattaagaaccatcataagagcatat 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 atcttcagtcgctttacaatcacacatctccatatattaagaaccatcataagagcatat 263

                                                                       
Query: 64  gcagaatggaagggatctgtaactagaaaaaaaaaaagttccctttcccaaggatcattt 123
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 264 gcagaatggaagggatctgtaactagaaaaaaaaaaggttccctttccaaaggatcattt 323

                                                                       
Query: 124 gactgagaaatgcttaaaatgtccattctcagcatcatggcccaattccttgctaatgca 183
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 gactgaaaaatgcttaaaatgtccattctcagcatcatggcccagttccttgctaatgca 383

                                                                       
Query: 184 ggaggcattccgtgctggtgggtgttgggaactagattgtttctctaaaatccatgtctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaggcattccgtgctggtgggtgttgggaactagattgtttctctaaaatccatgtctg 443

                                                                       
Query: 244 gggtctttgcgcctatgcccaggtaattctggatgccattctgtttacagatagagttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggtctttgcgcctatgcccaggtaattctggatgccattctgtttacagatagagttgc 503

                                                 
Query: 304 acagaagtaacgaagaaagcagtccttaggggaggact 341
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagaagtaacgaagaaagcagtccttaggggaggact 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)