BAC Information

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BAC

Clone NameMSMg01-352J02
Chromosome12 (Build37)
Map Location 13,223,649 - 13,223,929
singlet/doubletsinglet
Overlap genenone
Upstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449
Downstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352J02.T7 (MSMg01no352_j02.b1)MSMg01-352J02.TJ (MSMg01no352_j02.g1)
ACCAG463663AG463664
length785795
length of high quality
(start - end)
368 (52 - 419)281 (84 - 364)
definitionCHROMAT_FILE: MSMg01no352_j02.b1 PHD_FILE: MSMg01no352_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:10 2005CHROMAT_FILE: MSMg01no352_j02.g1 PHD_FILE: MSMg01no352_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAACATTTCAAACTCGAACGGCCGAGAAGCACTTAAAT
ATTCAAAGTCCTTAGTCTTCAGAGAAATGAAAATCAAAACGACCCTGAGA
TTCTACCTGACATCAGTCAGAGTGGCTAAGATCAAAAACTCAGATGACAG
TAGATGCTAGTGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGCTAGT
GGGATTGCAAACTGGTACAACCACTTTGGAAATCAACCTGGCGGTTCCTT
GAAAACTGGAAATAGTTCTGCCTGAAGACCCAGCTATACCCTTCTTAAGC
ATATATCCAAAAGATGCTCCACCATCTTCTTGCATCTTCTTAGTTACCTG
GTTAGTTAACAACTTTACACCCCCCCCACCGATTTGGTAGGTGAAATTGT
ATTCTAGTGACAAACTCTCTTTCTCTCTCACTTGTTGTCAGTTTTGTTCT
ATCTTGTCGGCTCATTAACTTTCTCAGTATGTCATTTAAGCTGGCTTCCG
ACTCTTCTTTTCCCTTGACTTTTTCACCCTGAATACTGCTTATTTCCCCT
TCCCCTGCCCCCCCCTTTTTTCTTGTCCCCCTTCTTCTTTTGTCTTTTTT
CCCCTCTTGATCCGTTATTCCGTTTCTTGTATTTCCCTCTGAATGTATTC
TTCCCCCCCCCGCTTTTTTCCTTTTTACCTCCCCTTTCTCTTCTCGCTCC
TCCTCTCCTATCTTCGGTTATCATTACGTATATCA
TTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACTGAACACTGGAT
ATTTTCCAGGACCGGACCGCCAGTGCCAGATTACTTTCTGAAGGGGTTGT
GCTGATTGACAGTCACACTAACAACCCAGGAAGAGCCTTGTGGAATATAT
TTTATGAATTAAAATAGAACTTGTTGTACTTAAACCTTGCTGTGTGTTTA
TAGAGTATAGATCAGTGCTAGTGAGAAGCAGATAGGAGGCACTTCCCACT
TGACTCTGTACCCTGCTCCTTCCCTGTGACTGCCACCACCCCCACCCTTC
CTACCCCCACCCGGCCACTATCCTATGGGTTATACCCTAAATATCCACTA
ACATCCACGCTTGAAGTCGGTCCCCCCCCCTTTCTTCTCTTCCCCCCTTT
CCCTTGTTTCACCCCTCGTTCCCTTTTACCCCCCCCTGCCCCCCTTCCTT
TTCCCCCCCCTCCCATTCTTTTTCCCCCCTCCCCCTTTACCTTCTCCCCT
TTACCTTTTTTTTCCCCTTTTTCCGTCTCTCTTTCCCCCCCCTTATCTCT
TTTCTTTCTTTCTTTTCCCTTACCCCCCTTTCTTCCCCTTTTTTCCCCCT
TTTCCCCTTTTTTTCCCCCCTTTTCTTCCCCTTTTTCTTTTTTTTTTCCC
CCTCCTCTCATTTTCCTCCTTCCTTTCTCTCCCCCCCCCCTCTTCTTCTT
TTTTCCCCTTTTCCTTTCTCTCCCCTATTACCCTTCCCCTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_j02.g1 MSMg01no352_j02.g1 CHROMAT_FILE:
MSMg01no352_j02.g1 PHD_FILE: MSMg01no352_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:10 2005
         (281 letters)



>mm_chr12_13223449_13224129
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagactgaacactggatattttccaggaccggaccgccagtgccagattactttctgaag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 481 aagactgaacactggatattttccaggaccagaccgccagtgccagattactttctgaag 422

                                                                       
Query: 61  gggttgtgctgattgacagtcacactaacaacccaggaagagccttgtggaatatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggttgtgctgattgacagtcacactaacaacccaggaagagccttgtggaatatatttt 362

                                                                       
Query: 121 atgaattaaaatagaacttgttgtacttaaaccttgctgtgtgtttatagagtatagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgaattaaaatagaacttgttgtacttaaaccttgctgtgtgtttatagagtatagatc 302

                                                                       
Query: 181 agtgctagtgagaagcagataggaggcacttcccacttgactctgtaccctgctccttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtgctagtgagaagcagataggaggcacttcccacttgactctgtaccctgctccttcc 242

                                                    
Query: 241 ctgtgactgccaccacccccacccttcctacccccacccgg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgtgactgccaccacccccacccttcctacccccacccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)