BAC Information

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BAC

Clone NameMSMg01-352P24
Chromosome12 (Build37)
Map Location 115,855,137 - 115,855,479
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860
Downstream geneIghv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P24.T7 (MSMg01no352_p24.b1)MSMg01-352P24.TJ (MSMg01no352_p24.g1)
ACCAG463987AG463988
length765798
length of high quality
(start - end)		347 (50 - 396)388 (77 - 464)
definitionCHROMAT_FILE: MSMg01no352_p24.b1 PHD_FILE: MSMg01no352_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:44 2005CHROMAT_FILE: MSMg01no352_p24.g1 PHD_FILE: MSMg01no352_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCTTATCTCCTTTGTAATGTTTTAATATGTTATATTATT
TTTGTGGCAAGAGGAATGTACATATGCATCAAAGTGGATATATTAGCCTT
AGAGGACTACTTTCATAATTGAATTCCAAGATATTTTTTGATATTGCTAA
GCTTGCCAGAAGACATCTTTATTGGCTCAGCCATTTTGAGGTCACCAATG
AGGTAATTTTCACTAGTTTAATTTGTGTTTTTTGACCTGGTAAATATAGC
TCCTGAGAGTTTGTTTTTATAGTAAGAACAGCTCAATCCCTGAAGATAGA
ATTACTTTTTTTTAAGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GCGCTTTTTTTTTTTGTTGCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNN
NNNNNNNCNTNNNNTCNTNCCCCCTCCTCCCCCCTCCCCNCCCCCCCCTC
TTCTCTTCTTTTCCCCCCTCCCCCTCTTTTCCCTCCTCCCTCTCCCCTCC
CCTTTCTCTTTCTCCCTTCTTTTTCCCCTTCCCCCCCTTTTTTCCCCCTT
CCCTTCCCCCCCTTTTTCTTTCTCCCTCTTCCTTTTCTTTTTTCCCTCTT
TCTCCCTCTTTCTTTTTTTTTTTTCCCCCTTTCTCTTTTCCCCGCCCCCC
CTATTTCCTTCTTCCTCCTTTCCTTTTCTCCTTCTCCTTTCCCCCCTTCT
CCCGCTTCTCTTCCT

NNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGCTAAATTCCCCTCCCAAT
AGGAAAGCAGGTGACTTTAAGATCTTCATTGATGATAATGTACTAGCAAA
ATAGATTCGGAGTCAGAGACATCAGTCATTGTCTCACTATAAAGGAGAGC
CAATTGTCCCTTCCTCTGTGACCTGCAAGCATATTAGTTGCAAGGATATG
CTACTGCTGAAGTGGCACTGGGCAGCTATAGTGTAAAAGATGGAAAATCT
AAACTCCAGGTGGGTTCATGACCAGCAGGGGTCACAAAGGAGCTAAGAAT
CCCCAACAAAGAGGTGTGGTATGGGATTACTCTGTGTCCTCTGTGGTTTC
CTTTCTTAATTTACAGATGCCTATTGCGATTAACATGTGACGTTTCCATA
CTCAAACACTGTGAAGAATCTCTGGTAAACATTTCCAAGACGCATATTTT
CTTGTCATTTGGCAAATGAAAACCTATATTCCTAAAATCTTTCATAAACT
GGGCCCCCCTCCCCGTATTATTCCGGATTTGTCCTCGGGTTCCTGGACCC
TATTTGTTAAAAATCACCTGGTTTCGCTCCCCCTATAAAAACCCTCTTTA
CCCCTTTCCCATTTGTTGCCCCCCCTATCTTGGCAACCTTGTGTAATTGC
GCCCCTTACTCTATTACAGACAGCCCTTTGCATTCTACCCCCAATTTTTT
CTTTTTTCCCCCTTTCCTTAATCCTACCCTTTTTCCTTCTTATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p24.b1 MSMg01no352_p24.b1 CHROMAT_FILE:
MSMg01no352_p24.b1 PHD_FILE: MSMg01no352_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:44 2005
         (347 letters)



>mm_chr12_115854933_115855679
          Length = 747

 Score =  644 bits (333), Expect = 0.0
 Identities = 341/345 (98%), Gaps = 4/345 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcttatctcc--tttgtaatgttttaatatgttatattatttttgtggcaag 62
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcttatc--cattttgtaatgttttaatatgttatattatttttgtggcaag 262

                                                                       
Query: 63  aggaatgtacatatgcatcaaagtggatatattagccttagaggactactttcataattg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggaatgtacatatgcatcaaagtggatatattagccttagaggactactttcataattg 322

                                                                       
Query: 123 aattccaagatattttttgatattgctaagcttgccagaagacatctttattggctcagc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattccaagatattttttgatattgctaagcttgccagaagacatctttattggctcagc 382

                                                                       
Query: 183 cattttgaggtcaccaatgaggtaattttcactagtttaatttgtgttttttgacctggt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cattttgaggtcaccaatgaggtaattttcactagtttaatttgtgttttttgacctggt 442

                                                                       
Query: 243 aaatatagctcctgagagtttgtttttatagtaagaacagctcaatccctgaagatagaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaatatagctcctgagagtttgtttttatagtaagaacagctcaatccctgaagatagaa 502

                                                        
Query: 303 ttacttttttttaagatttgtgtgtgtgtgtgtgtgtgtgtgtgt 347
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttacttttttttaagatttgtgtgtgtgtgtgtgtgtgtgtgtgt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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