BAC Information

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BAC

Clone NameMSMg01-353B11
Chromosome12 (Build37)
Map Location 96,329,888 - 96,330,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353B11.T7 (MSMg01no353_b11.b1)MSMg01-353B11.TJ (MSMg01no353_b11.g1)
ACCAG464055AG464056
length766805
length of high quality
(start - end)		516 (54 - 569)234 (82 - 315)
definitionCHROMAT_FILE: MSMg01no353_b11.b1 PHD_FILE: MSMg01no353_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:51 2005CHROMAT_FILE: MSMg01no353_b11.g1 PHD_FILE: MSMg01no353_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTGTTTTTAATAGTTGAGTAGTACTCCATTGTGTAA
ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATTTGGGTTC
TTTCTAGCTTCTTGCTGTTATAAATAAGGCTGCTATGAACATAGTGGAGC
ATGTGTCCTGATTACAAGTTGGAGCATCTTGTGGGTATATGCCCAGGAGT
AGTATTGCAAGATCTTCTGGTAGAACTATCCCCAATTTTCTGAGGAACCG
CCAAACTGATTTCCAGAGTGGTTGTACCAGCTTGCAATCCCACAAGCAAT
GTTGGAGTGTTTCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACTT
GAGTTTTGACCTTAGCTATTCTAACTGCTGTGAGGTAGAATCTCAGGATT
GTTTTGATTTGCATTTCCCTGATGACTAAGGATGTTGAACATTATTTTTT
TAAGGTGCTTCTTGGCCATTTGGTATTCCTCAGCTGAGAATTTTTGTTTA
GCTCTGTACCCCTCCCCTCTTTGTTTTAATAGTTTTATTTGGTTTTCTGG
AGCCCAACTTCTTGAGTTCTTTATAAATATTGTATATTAGCCCCCTAAAG
CATTTAGGATTGGTAAAGATCTTTTCCCCATCGGTTTGGTGGTGTTTTGT
CTTATTGAAAGAGGCTTTTGGCCTTACTAAACTTTGCAATTTTTTAAAGC
CCCTCTTTTTGTACCG

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGACAGCCAGGGCTACA
CAGAGAAACCCTGTCTGGAAAAAGCCCAAAAAAGTGGATATTTTAGAATT
TTTAATGAAAATTTAATTGTTCATTGTCTTATTGTTAAACAATTAATATC
AACAATGGCATCCTTATTAATGATCAAGTATATTTTTAATACTAGCTGTT
TCCATGATTTGCTAGCTGCATAACTGGATGAATGTATGGGTGGGTGGATG
AATGGATGAATGGATGNCCCNNCTTTTTTTTTTTTTNCNCCCCCNCCCCC
CCCNCNCCCCCCNCCCTTTTCTTCCTCCCCTTCTTTGCTTCTCTCTTTTT
TCTTCCTTTCTTTTCTTCTCCCCATCCTCCAATCATTCCTATTCTCCTTT
TTCTATACATCCTTCCCCTTTTTTCTTCTTTCCTCCCTTCTTCCCCTATT
CTTTTTTTTCTTTTTTTCCCTCCCCGCACCTTTACCTATACCCATACCTA
CGTAAATTATTTTTTTCTTCACCTCTTACCATTCCTATTTTTCCCCTTTT
CTCCATTCTCTTTTTTCCCCCCTTTTTTTTTCCCATTTCTCTTTCCGCCC
TTTCCATCCCCTTTTTCCCTTTCCTATCCCCCCTTTTCCTTTTTCTTATT
TCCCCCTATTTTCCTCCCTCTTTCCCCTTCGTTCCCCCTTCTTTCCCTTT
TTCCTTTATTACCCCTTTCCCCCTTCCTCTTTTTTATATTTATCCTCCCT
TATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_b11.g1 MSMg01no353_b11.g1 CHROMAT_FILE:
MSMg01no353_b11.g1 PHD_FILE: MSMg01no353_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:51 2005
         (234 letters)



>mm_chr12_96329685_96330318
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggacagccagggctacacagagaaaccctgtctggaaaaagcccaaaaaagtggatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taggacagccagggctacacagagaaaccctgtctggaaaaagcccaaaaaagtggatat 378

                                                                       
Query: 61  tttagaatttttaatgaaaatttaattgttcattgtcttattgttaaacaattaatatca 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttagaatttttaattaaaatttaattgttcattgtcttattgttaaacaattaatatca 318

                                                                       
Query: 121 acaatggcatccttattaatgatcaagtatatttttaatactagctgtttccatgatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acaatggcatccttattaatgatcaagtatatttttaatactagctgtttccatgatttg 258

                                                                 
Query: 181 ctagctgcataactggatgaatgtatgggtgggtggatgaatggatgaatggat 234
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 257 ctagctgcataactggatgaatgcatgggtgggtggatgaatggatgaatggat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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