Query= MSMg01no353_f03.b1 MSMg01no353_f03.b1 CHROMAT_FILE:
MSMg01no353_f03.b1 PHD_FILE: MSMg01no353_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:09 2005
(579 letters)
>mm_chr12_41873440_41874418
Length = 979
Score = 1058 bits (547), Expect = 0.0
Identities = 568/575 (98%)
Strand = Plus / Plus
Query: 5 gaattcagtatgcttccctgaaggctggtatatttacatttcagatgactaggaagatgg 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtatgcatctctgaaggctggtatatttacatttcagatgactaggaagatgg 264
Query: 65 ggcagggagctgtcctttctattttaggggtgtcggggcaggaggggaaggggagctgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ggcagggagctgtcctttctattttaggggtgtcggggcaggaggggaaggggggctgtc 324
Query: 125 attcaacagccaacagctttattgaccagagtttcctggaaggagaatgacttctctgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcaacagccaacagctttattgaccagagtttcctggaaggagaatgacttctctgaa 384
Query: 185 gttccttgctttgacctcagtgttcctgcttggcttccagctttattaagtgaagagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttccttgctttgacctcagtgttcctgcttggcttccagctttattaagtgaagagaga 444
Query: 245 ctttgccttccattagcatgtcttgtaacagcagacaagctctgtgtgactaaaacagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttgccttccattagcatgtcttgtaacagcagacaagctctgtgtgactaaaacagtc 504
Query: 305 atatgcaaaggagactgtttaccttaaattagactcccaagggaacacttgtagctttaa 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 atatgcaaaggagactgtttaccttaaattagattcccaagggaacacttgtagctttaa 564
Query: 365 ctgccatggaagctggaactttggttctctagaggactgtcagacatgctgtagaaaggg 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgccatggaagctggaacgttggttctctagaggactgtcagacatgctgtagaaaggg 624
Query: 425 gcatgtttgccaacagtgaggagcagactcctgactgctatgcttgcttcatcccaaacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcatgtttgccaacagtgaggagcagactcctgactgctatgcttgcttcatcccaaacc 684
Query: 485 ccttgtatgtacaaaaaggaaatggcagatgatttccaagtaactatcatttttaatctg 544
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 ccttgtatgtacgaaaaggaaatggcagatgatttcaaagtaactatcatttttaatctg 744
Query: 545 taggaaaacatttttctatgtcttaccccctaatg 579
|||||||||||||||||||||||||||||||||||
Sbjct: 745 taggaaaacatttttctatgtcttaccccctaatg 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_f03.g1 MSMg01no353_f03.g1 CHROMAT_FILE:
MSMg01no353_f03.g1 PHD_FILE: MSMg01no353_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:09 2005
(522 letters)
>mm_chr12_42046571_42047492
Length = 922
Score = 884 bits (457), Expect = 0.0
Identities = 500/519 (96%), Gaps = 8/519 (1%)
Strand = Plus / Minus
Query: 4 aaaaaaaaaaaaaagcaactaaatatccaaggtaagggaatagcttttgcctgcaccaca 63
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 693 aaaaaaaaaaaaaagcaactaaatatccaaggtaaggg--------ttgcctgcaccaca 642
Query: 64 gtacacacaaagtaaatgctaatatactgagtaaataaacatcacaggcaactcagaatt 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 641 gtacacacaaagtaaatgctaatatactgagtaaataaacatcacaggcagctcagaatt 582
Query: 124 gcttctttatactaataaaattggaaaggatactgcatcaatagaaatgggaaaataatg 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 581 gcttctttatactaataaaattggaaaggatactgtatcaatagaaatgggaaaataatg 522
Query: 184 aaccctggatctgacaagatgaataattaattccatttgctatcctacaagagtatttca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaccctggatctgacaagatgaataattaattccatttgctatcctacaagagtatttca 462
Query: 244 taaaagtgtatgtgacgtttcttatcccaactcccttggagactttgttcatgctgtatt 303
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 461 taaaagtatatgtgacatttcttatcccaactcccttggaaactttgttcatgctgtatt 402
Query: 304 tcatgacccagtggcacagcatcaataatttgtattttaacgtccactaaataagatgtg 363
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 401 tcatgactcagtggcacagcatcaataacttgtattttaacgtccactaaataagacatg 342
Query: 364 taacatctgttatattacttacttcacttaaaaatgtttttctgtaatcaccttgtttgt 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taacaactgttatattacttacttcacttaaaaatgtttttctgtaatcaccttgtttgt 282
Query: 424 acagttttaataacttaggcatgatgaaaaagttataaaattaaataatttttcaaatta 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 281 acagttttaataacttaggcatgatgaaaaagttataaaattaaataatttttcaagtta 222
Query: 484 taaattaaaacataagaagactagctcatatttcataca 522
|||||||||||||||||||||||||||||||||||||||
Sbjct: 221 taaattaaaacataagaagactagctcatatttcataca 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
