Query= MSMg01no353_f13.b1 MSMg01no353_f13.b1 CHROMAT_FILE:
MSMg01no353_f13.b1 PHD_FILE: MSMg01no353_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:12 2005
(541 letters)
>mm_chr12_11438452_11439392
Length = 941
Score = 971 bits (502), Expect = 0.0
Identities = 532/542 (98%), Gaps = 2/542 (0%)
Strand = Plus / Minus
Query: 1 aaaacctgggaataatggtgtctgcttacaatcccagactggggtggcagagacaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 aaaacctgggaataatggtgtctgcttacaatcccagactggggtggcagagacaggctg 829
Query: 61 acccttgcaactcactgacttgccatctcggcctagtaagggagacccca-atcccaatg 119
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 828 acccttgcaactcactgacttgccatctcggcctagtaagggag-ccccagatcccaatg 770
Query: 120 agagaccctgtctcaaacacaaaaacaaacagcaaacaacaacaacaaaagagagattgc 179
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 769 agagaccctgtctcaaacacaaaaacaaacagcaaacaacgacaacaaaagagagattga 710
Query: 180 gtttgatttatggcttccatgacttccatacatgtgagcacagacatgtacactcacaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gtttgatttatggcttccatgacttccatacatgtgagcacagacatgtacactcacaca 650
Query: 240 tgcatgtgcatacatgcaaagaagggaacatattcaacaaatctaaggtttgacattgtc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgcatgtgcatacatgcaaagaagggaacatattcaacaaatctaaggtttgacattgtc 590
Query: 300 tctctcagctatatgtaatgggtatgtcattaattctttaaaaaatgtgtaatgccaaag 359
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 589 tctctcagctatatgtaataggtatgtcattaattctttaaagaatgtgtaatgccaaag 530
Query: 360 aatgatagctgtttctatttccctcagttatctagcctgttcctccaacataaataaggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aatgatagctgtttctatttccctcagttatctagcctgttcctccaacataaataaggt 470
Query: 420 agatggtatttaagaaaaactatcaccttcaagactttatgaacagtatgaaatcaaggt 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 agatggtatataagaaaaactatcaccttcaagactttatgaacagtatgaaaccaaggt 410
Query: 480 gttagtgagatttataggatttctacaatatctacatatatttcctagcagaaactctaa 539
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttagtaagatttatagtatttctacaatatctacatatatttcctagcagaaactctaa 350
Query: 540 tg 541
||
Sbjct: 349 tg 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_f13.g1 MSMg01no353_f13.g1 CHROMAT_FILE:
MSMg01no353_f13.g1 PHD_FILE: MSMg01no353_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:12 2005
(247 letters)
>mm_chr12_11274088_11274733
Length = 646
Score = 427 bits (221), Expect = e-124
Identities = 245/263 (93%), Gaps = 17/263 (6%)
Strand = Plus / Plus
Query: 1 caggttagctcaggctacagagaaaaactgtccaaaaaaaaaaaaaaa------------ 48
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 185 caggttagctcaggctacagagcaaaactgtccaaaaaaaaaaaaaaaaaaaaaaaaaaa 244
Query: 49 ----cccaaaagtagttggtctgaatgggtgtagaaagtctagagacaaagcttacccct 104
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaaacccaaaagtagttg-tctgaatgggtgtagaaagtctagagacaaagcttacccct 303
Query: 105 tgtaattgcttaaaacatgcttttgttccacacagagggtagacagtgtgtgcaaagtaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtaattgcttaaaacatgcttttgttccacacagagggtagacagtgtgtgcaaagtaa 363
Query: 165 tgccacctccttacctcttggttctaagtcacagaactgactcctgagagattaattcag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgccacctccttacctcttggttctaagtcacagaactgactcctgagagattaattcag 423
Query: 225 tataaagtgttcagtattgagct 247
|||||||||||||||||||||||
Sbjct: 424 tataaagtgttcagtattgagct 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
