Query= MSMg01no353_g01.b1 MSMg01no353_g01.b1 CHROMAT_FILE:
MSMg01no353_g01.b1 PHD_FILE: MSMg01no353_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:14 2005
(556 letters)
>mm_chr12_57162816_57163771
Length = 956
Score = 716 bits (370), Expect = 0.0
Identities = 385/390 (98%)
Strand = Plus / Minus
Query: 162 cccagccatgagacctctcaaccatatcagctattggcatggcacggtgaccacaagatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 cccagccatgagacctctcaaccatatcagctattggcatggcacggtgaccacaagatt 897
Query: 222 gtagtagtggcacacacgccttgctagtaaccgacagcaactagtgaagaaagaagacat 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 896 gtagtagtggcacacacgccttgctagtaaccgacagcaactagtgaagaaagaagtcat 837
Query: 282 gaatttgaaagaaagcaagggatgcatgggaagtttaggatggagaaaagagaaaggaga 341
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaatttgaaagaaatcaagggatgcatgggaagtttaggatggagaaaagagaaaggaga 777
Query: 342 aatgctcctattataatatcataaatgttatcataattgtaattattaaaacattcggca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aatgctcctattataatatcataaatgttatcataattgtaattattaaaacattcggca 717
Query: 402 ataccatctcaaatattgcgcatcttacaatgactgcaaaaggcatccaagtaatcaaag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ataccatctcaaatattgcgcatcttacaatgactgcaaaaggcatccaagtaatcaaag 657
Query: 462 tttatgttgagctactgtccagattgttatgggatcgggtgactgtccagactgtcatga 521
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 656 tttatgttgagctactgtccagactgttatgggagcgggtgactgtccagactgtcatga 597
Query: 522 gagagggctactgtccagactgccatgaga 551
||||||| ||||||||||||||||||||||
Sbjct: 596 gagagggttactgtccagactgccatgaga 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_g01.g1 MSMg01no353_g01.g1 CHROMAT_FILE:
MSMg01no353_g01.g1 PHD_FILE: MSMg01no353_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:14 2005
(461 letters)
>mm_chr12_56989369_56990229
Length = 861
Score = 847 bits (438), Expect = 0.0
Identities = 458/468 (97%), Gaps = 8/468 (1%)
Strand = Plus / Plus
Query: 1 cattttgtcagttggagcacataatggtaaatgcagtacagccatgtgtgaactacatag 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cattttgtcagttggagaacataatggtaaatgcagtacagccatgtgtgaactacatag 254
Query: 61 accatgtgcaccagtgaattctgcagtatttttattt------atttttattttattttt 114
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 accatgtgcaccagtgaattctgcagtatttttatttttatttatttttattttattttt 314
Query: 115 taactgcagtggctaacagtagtcaccagcagagggcactttgggctcttatgttacaat 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 taactgcagtggctaacagtagtcaccagcagagggcactttgggctcttatgttacaat 374
Query: 175 gccaggtagtttatatagtagaaaggacatatctgacatctctcaatttcctgtcatttc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gccaggtagtttatatagtagaaaggacatatctgacatctctcaatttcctgtcatttc 434
Query: 235 ctggatcagtttacgaaccctgggactgaggagggattggtcact-gaaaacccctgggc 293
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 435 ctggatcagtttacgaaccctgggactgaggagggattggtcacccgaaaacccctgggc 494
Query: 294 acttgtcatctcagtctggaggatgagtgagagacgttcctggacaagtgaatgggagga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acttgtcatctcagtctggaggatgagtgagagacgttcctggacaagtgaatgggagga 554
Query: 354 gggctggaacgtcgctgggttttctcacccattcagccggttcccagtgccagatgttct 413
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gg-ctggaacgtcgctgggttttctcacccattcagccggttcccagtgccagatgttct 613
Query: 414 cccagccatctggaatggagtccagggataaaggcgtttgcttttaca 461
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cccagccatctggaatggagtccagggataaaggcgtttgcttttaca 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
