BAC Information

Click to search

BAC

Clone NameMSMg01-353G21
Chromosome12 (Build37)
Map Location 86,199,764 - 86,419,074
singlet/doubletdoublet
Overlap geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1
Upstream geneLOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2
Downstream geneProx2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353G21.T7 (MSMg01no353_g21.b1)MSMg01-353G21.TJ (MSMg01no353_g21.g1)
ACCAG464309AG464310
length778798
length of high quality
(start - end)		505 (49 - 553)367 (80 - 446)
definitionCHROMAT_FILE: MSMg01no353_g21.b1 PHD_FILE: MSMg01no353_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:18 2005CHROMAT_FILE: MSMg01no353_g21.g1 PHD_FILE: MSMg01no353_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,418,576 - 86,419,074)(86,199,764 - 86,200,128)
sequence
NNNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGTCAAATTCACCAGCTCAACACAGCCGCTCAGCTGCTGGC
TCCACTGAACCCAAGGGCAGGCTCACTGGTTCCCTTTTCTGTGTAAACGG
CTCACGTCTACCTTCAGGAGCCGGGGAAGGGGAAGCCCACTGCAAATTCA
CTGAGTGTATTGTATTGCCTTGCTCAGGGAAAACAACTGCCTTTCCAAAA
TATCAGATACAAAGTGATCATACATTTATATATGCAACTTAATCACATAA
GCCTTCCTAACAACGCCTTTCAGAATTATTACCAGCCCTCAGGATATACA
TCGGAAGCCCTCAGATTATGGCAGGTAGTTTGTAACCTCCAAATGTAGCT
TCTAGTAGTCTCCGCAGTATTTTGTAAAGACCACTTCACATAAAAATCCA
GATTTCCAATTACCTTTATCAGGGAATGCTGGTACTTTCCTTGAAGGCAG
TTACCATTCCATGGGTCAGGCACTTTGTAGCAGTCCCGTCCTCACCAAGC
TCTCTTCCCTCCCGGCTACCCCGCATCACTGTACTTTAAGTGATGCCTTT
CCTCACAGTAAAAAGACAAATACTTGCATTTGAAATTCTCCCCAGGGGGA
AAAAGAAAACAGTCTATAAAAAATGTTTCATGGGGGGGAGGGGGGAGCAC
TTTTCTCTGACAAAAACTCCCATTTGGCAAATCTTAAACCATACTCTTGG
CTTGGGCCACGTCCCTTTATGGTTTTCT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTCGTGTAGGTGTTTGA
TTGGTCCAACGAACAGCTCACGGGGAATGGGAAATCAGAAGGGAAACTGG
ATACATCATCTCCGCTGTCTGTTACATCATCACAGATGAAAGTCATACGA
CTTCCAGAGCAGCCAGCTGTGTTGATAGATAAACACCTTCCTGGGAAGAT
GACCGTTCCCAGCTGGCTGAGGGAGGGTCTGAGCTTCGGACCAGATCTCA
TCAGCCTGTTTTGTATATATCACCAGACTGCAGTGTCTGGTTTGTTCTGA
GCCAATCACATGTATTATGAGACTGGATCATGAACTCCTCTTTTTCTCCT
CTACAAAGGCACCCAAAATGATCCACTATGGTGGCCTCAATTGCTTAGCT
AAAAGAAGGAAAGTTCTGACAGTTTTTACTGCTTGTGTATGTGTGCGTGC
GTGTGTTCCCCCATTTTTTTCCTTTCCTACCTTCCCTTTTTCAACCTTTC
TCCATTTTCTACTTCTACTTCTCATATATCATATTTCTCTACTACTTTTA
TCCATTTTCCCCTTCTTTTCTTCTTTCTCCCAATTTTTTTTACCTCCTTT
CATCCTTTATCCCCCTTTTTCTCTTTTTTCTCCTCTCTTCCCTCCCTATT
TACTCCTATCCCTTTATTATTCCCTATCTACATTTCATCCTTTCGCTCTT
CCCCCCCGCTCTCATTTACCTACATTTTATCCCTTATTTCTTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_g21.b1 MSMg01no353_g21.b1 CHROMAT_FILE:
MSMg01no353_g21.b1 PHD_FILE: MSMg01no353_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:18 2005
         (505 letters)



>mm_chr12_86418370_86419274
          Length = 905

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctggtcaaattcaccagctcaacacagccgctcagctgctggctccactgaacccaa 66
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 705 attctggtcaaattcaccagctcagcacagccgctcagctgctggctccactgaacccaa 646

                                                                       
Query: 67  gggcaggctcactggttcccttttctgtgtaaacggctcacgtctaccttcaggagccgg 126
           |||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 645 gggcaggctcgctggttcctttttctgtgtaaacggctcatgtctaccttcaggagccgg 586

                                                                       
Query: 127 ggaaggggaagcccactgcaaattcactgagtgtattgtattgccttgctcagggaaaac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggaaggggaagcccactgcaaattcactgagtgtattgtattgccttgctcagggaaaac 526

                                                                       
Query: 187 aactgcctttccaaaatatcagatacaaagtgatcatacatttatatatgcaacttaatc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aactgcctttccaaaatatcagatacaaagtgatcatacatttatatatgcaacttaatc 466

                                                                       
Query: 247 acataagccttcctaacaacgcctttcagaattattaccagccctcaggatatacatcgg 306
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 465 acataagccttcctaacaatgcctttcagaattattaccagccctcaggatatacatcag 406

                                                                       
Query: 307 aagccctcagattatggcaggtagtttgtaacctccaaatgtagcttctagtagtctccg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagccctcagattatggcaggtagtttgtaacctccaaatgtagcttctagtagtctccg 346

                                                                       
Query: 367 cagtattttgtaaagaccacttcacataaaaatccagatttccaattacctttatcaggg 426
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagtattttgtaaaaaccacttcacataaaaatccagatttccaattacctttatcaggg 286

                                                                       
Query: 427 aatgctggtactttccttgaaggcagttaccattccatgggtcaggcactttgtagcagt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aatgctggtactttccttgaaggcagttaccattccatgggtcaggcactttgtagcagt 226

                              
Query: 487 cccgtcctcaccaagctct 505
           |||||||||||||||||||
Sbjct: 225 cccgtcctcaccaagctct 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_g21.g1 MSMg01no353_g21.g1 CHROMAT_FILE:
MSMg01no353_g21.g1 PHD_FILE: MSMg01no353_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:18 2005
         (367 letters)



>mm_chr12_86199564_86200330
          Length = 767

 Score =  690 bits (357), Expect = 0.0
 Identities = 363/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattctcgtgtaggtgtttgattggtccaacgaacagctcacggggaatgggaaatcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctcgtgtaggtgtttgattggtccaacgaacagctcacggggaatgggaaatcaga 260

                                                                       
Query: 61  agggaaactggatacatcatctccgctgtctgttacatcatcacagatgaaagtcatacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggaaactggatacatcatctccgctgtctgttacatcatcacagatgaaagtcatacg 320

                                                                       
Query: 121 acttccagagcagccagctgtgttgatagataaacaccttcctgggaagatgaccgttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttccagagcagccagctgtgttgatagataaacaccttcctgggaagatgaccgttcc 380

                                                                       
Query: 181 cagctggctgagggagggtctgagcttcggaccagatctcatcagcctgttttgtatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctggctgagggagggtctgagcttcggaccagatctcatcagcctgttttgtatata 440

                                                                       
Query: 241 tcaccagactgcagtgtctggtttgttctgagccaatcacatgtattatgagactggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaccagactgcagtgtctggtttgttctgagccaatcacatgtattatgagactggatc 500

                                                                       
Query: 301 atgaactcctctttttctcctctacaaaggcacccaaaatgatccactatggtggcctca 360
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaactcctctttttctcttttacaaaggcacccaaaatgatccactatggtggcctca 560

                
Query: 361 attgc 365
           |||||
Sbjct: 561 attgc 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |