Query= MSMg01no353_h16.b1 MSMg01no353_h16.b1 CHROMAT_FILE:
MSMg01no353_h16.b1 PHD_FILE: MSMg01no353_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:22 2005
(547 letters)
>mm_chr12_90763298_90764244
Length = 947
Score = 1017 bits (526), Expect = 0.0
Identities = 541/548 (98%), Gaps = 5/548 (0%)
Strand = Plus / Plus
Query: 5 gaattcactttgtagacctacctagccttgaactcagagatccacctgcttctgcctccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcactttgtagacctacctagccttgaactcagagatccacctgcttctgcctccc 260
Query: 65 aagtccagagattaaaggtgtgtgccacctggcccagcagaatgtacctcatttttaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtccagagattaaaggtgtgtgccacctggcccagcagaatgtacctcatttttaagt 320
Query: 125 tagaagaaaaatcatggtctaccatatactacttaaaacaaaacaaaacaaaacccccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaagaaaaatcatggtctaccatatactacttaaaacaaaacaaaacaaaacccccaa 380
Query: 185 tcaatcaatcaatcaat----aatcaattaatcaaactaaaaaaccaataacgggctcca 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatcaatcaatcaatcaataatcaattaatcaaactaaaaaaccaataacgggctcca 440
Query: 241 agcccaaatttgtttatatggactacaattaataaattctagagaaatttatttttcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccaaatttgtttatatggactacaattaataaattctagagaaatttatttttcagg 500
Query: 301 aaaaattggctttaaacactaatggaatatgtcttcccctttacctctgtagcttccatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaattggctttaaacactaatggaatatgtcttcccctttacctctgtagcttccatt 560
Query: 361 cttccttttccgtctttctctcccagcccctctccttctttcttgcccctcttctttctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccttttccgtctttctctcccagcccctctccttctttcttgcccctcttctttctg 620
Query: 421 atgggatttt-gttccatctttcctttcctcctttctttcttccatcccactcactgggc 479
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgggttttttgttccatctttcctttcctcctttctttcttccatcccactcactgggc 680
Query: 480 ttccttccctcctcataatccttcattcattcactacagactcaggaatctccactccat 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 ttccttccctcctcataatccttcattcattcactacagactcaggagtctccactccat 740
Query: 540 ctataggt 547
||||||||
Sbjct: 741 ctataggt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_h16.g1 MSMg01no353_h16.g1 CHROMAT_FILE:
MSMg01no353_h16.g1 PHD_FILE: MSMg01no353_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:22 2005
(429 letters)
>mm_chr12_90933718_90934550
Length = 833
Score = 791 bits (409), Expect = 0.0
Identities = 424/431 (98%), Gaps = 4/431 (0%)
Strand = Plus / Minus
Query: 3 acatcaattccccaggatttatgacagagatctgtaataacctactttttcacatccatt 62
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 833 acatcaattccccaggatttatgacagagatctgtaataacctacttttgcacatccatt 774
Query: 63 aactcttgctaagctaaaagaaataaatgatgaagggaagaaagaaatgaaagaataaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aactcttgctaagctaaaagaaataaatgatgaagggaagaaagaaatgaaagaataaga 714
Query: 123 aggcaggaaaagagtgcagagaaaaaggctaagagagaagaaagggagaaaaatagagat 182
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 713 aggcaggaaaagagtgcagagaaaaagggtaagagagaagaaagggagaaaaatagagat 654
Query: 183 atggagggaaggagaagaaatcaatcaactgagaagttccacatatccctggcttgggag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atggagggaaggagaagaaatcaatcaactgagaagttccacatatccctggcttgggag 594
Query: 243 aaaagttaactcattagaaaatagatggtcaagaag----atgggcttccaccaacaaaa 298
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 593 aaaagtcaactcattagaaaatagatggtcaagaagatgtatgggcttccaccaacaaaa 534
Query: 299 acataggcaaactgttgtattaagactttagtaggaataaaataacaacaaaaacatgtt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acataggcaaactgttgtattaagactttagtaggaataaaataacaacaaaaacatgtt 474
Query: 359 ctctgcctacagggatgtatccttcaggaaagacaccatgccaaacagaaatacctgcaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctctgcctacagggatgtatccttcaggaaagacaccatgccaaacagaaatacctgcaa 414
Query: 419 aagttttcatt 429
|||||||||||
Sbjct: 413 aagttttcatt 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 833
Length adjustment: 9
Effective length of query: 420
Effective length of database: 824
Effective search space: 346080
Effective search space used: 346080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
