BAC Information

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BAC

Clone NameMSMg01-354C12
Chromosome12 (Build37)
Map Location 35,876,520 - 35,877,050
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354C12.T7 (MSMg01no354_c12.b1)MSMg01-354C12.TJ (MSMg01no354_c12.g1)
ACCAG464854AG464855
length735768
length of high quality
(start - end)
539 (78 - 616)317 (77 - 393)
definitionCHROMAT_FILE: MSMg01no354_c12.b1 PHD_FILE: MSMg01no354_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:14 2005CHROMAT_FILE: MSMg01no354_c12.g1 PHD_FILE: MSMg01no354_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTCTTCTTTATGAATCAGATCGCCACTAGGTGGCAATGT
TGGTTCATAAATGCTTGAAAGCAAGGCTAACCATAAAAGAAAGAAACCAA
CTGACATCTGTTTTCCAAAAGTCAGAACAAATAACACACTCAGCAAAAAA
CATAACTAAAACGTGAAATCACACAAGGTCATCCGTAAGGGATCAGCTGA
GCAGTGGAAAGAGACGGGGTTCAGATGACACACTGAAGAAGGGTGCTGAA
GAATACAGCAGGCTAAGAGTTTCCAGAAAGGTCAGCCTGAGGGGAAATCC
AGGGAACCTGGACACGTGACTGTGGCAGTGCCCCCAAGGGGACTGGCACC
TTGAGAGGGTGAATGTGGTTTAAATATAATATGTCCTCATAGCCTCAGGT
ATTTGCACACTTGGACTCCAGCTGCGATGACGCCGTTTGAGAGTTTGTGG
AACCTGGAAGACTTAGAGCCTAACAGGAAGACCCAGGCCATTAATGGGTG
CCTTATAGACTGCTCTACTCAAGCAGACATCTATGCGTCCACGTCTGTAC
CCCANGAAGGCTGCCACGACTCCTGCCTAGACAGTAGTCCCTTACACAGT
CTGTCAACACAAGCATTCTCACTTGTCACAGATCCTCCCTAACTTTCTCC
ATGTTCCTACTCTGACTTCTGCTTCCCCTCTACAG
CACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACGCCATTT
TTAACTGGGTTATTTGGCTATTTGGTTTAACTTCTTGAGTTGTTTGTATA
TTTTGGTTATTTGCCCTCCATCAACCATGTATTTCAAAGCAGGTGATTTT
CTTATAGAATCAGAAAAAAATTGCACACCACACACACACACACACACACA
CACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAG
AGAGAGAGAGAGTGTCCTCTCCATTCATCCCTCCATGTAGCATTTCTATC
ACTATAAGCAAACAGATCCCATTCAAAGCAGAACATTTGGCTTTCGGTAG
CAACGGAAAGAGCGCTTCCCCAGCAGTAGGAAAGCCCGAAAGGGATATCT
ATTTTTATAAATAACATGTGAAACTCTCAGCATTTTGCTGATTTAACAAA
CCAGACAAACTACAGATCTTCCCCATGCAAAAGAGGAGAAAGGTCCTTAC
AGATTCCAGAGCTGGCTGATTTTGCACGTGACTTATTTAAAGATTTGCTC
TTATTTGCCTTCAGGTTTTCGCCGCTTTGTTTGCCTTTATGGCTCGGTAT
ATGATTCTATCCTCCGCCTTTTCCTCTCTTATATTTCTTATTACTCCGAT
ACTTTTTTTCTTCTTCTTATCTTGTATCTTCTTCCTCTTTCTGGTTCGGG
ATCTACTTGATTATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_c12.b1 MSMg01no354_c12.b1 CHROMAT_FILE:
MSMg01no354_c12.b1 PHD_FILE: MSMg01no354_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:14 2005
         (539 letters)



>mm_chr12_35876520_35877453
          Length = 934

 Score =  903 bits (467), Expect = 0.0
 Identities = 518/538 (96%), Gaps = 9/538 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   tcgccactaggtggcaatgttggttcataaatgcttgaaagcaaggctaaccataaaaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tcgccactaggtggcaatgttggttcataaatgcttgaaagcaaggctaaccataaaaga 472

                                                                       
Query: 64  aagaaaccaactgacatctgttttccaaaagtcagaacaaataacacactcagcaaaaaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 471 aagaaaccaactgacatctgttttccaaaagtcagaacaaataacacactcagc-aaaaa 413

                                                                       
Query: 124 cataactaaaacgtgaaatcacacaaggtcatccgtaagggatcagctgagcagtggaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cataactaaaacgtgaaatcacacaaggtcatccgtaagggatcagctgagcagtggaaa 353

                                                                       
Query: 184 gagacggggttcagatgacacactgaagaag--ggtgctgaagaatacagcaggctaaga 241
           |||||||||||||||||| ||||   || ||  |  ||||||||||||||||||||||||
Sbjct: 352 gagacggggttcagatgatacac---ag-agccg--gctgaagaatacagcaggctaaga 299

                                                                       
Query: 242 gtttccagaaaggtcagcctgaggggaaatccagggaacctggacacgtgactgtggcag 301
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtttccagaaaggtcagcctggggggaaatccagggaacctggacacgtgactgtggcag 239

                                                                       
Query: 302 tgcccccaaggggactggcaccttgagagggtgaatgtggtttaaatataatatgtcctc 361
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 238 tgcctccaaggggactggcaccttgagagggtgaatgtgatttaaatataatatgtcctc 179

                                                                       
Query: 362 atagcctcaggtatttgcacacttggactccagctgcgatgacgccgtttgagagtttgt 421
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 178 atagcctccggtatttgcacacttggactccagctgcgatgacaccgtttgagagtttgt 119

                                                                       
Query: 422 ggaacctggaagacttagagcctaacaggaagacccaggccattaatgggtgccttatag 481
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ggaacctggaagagttagagcctaacaggaagacccaggccattaatgggtgccttatag 59

                                                                     
Query: 482 actgctctactcaagcagacatctatgcgtccacgtctgtaccccangaaggctgcca 539
           ||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 58  acttcgctactcaagcagacatctatgcgtccacgtctttaccccaagaaggctgcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 934
Length adjustment: 10
Effective length of query: 529
Effective length of database: 924
Effective search space:   488796
Effective search space used:   488796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)