Query= MSMg01no354_e13.b1 MSMg01no354_e13.b1 CHROMAT_FILE:
MSMg01no354_e13.b1 PHD_FILE: MSMg01no354_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:23 2005
(580 letters)
>mm_chr12_63297545_63298524
Length = 980
Score = 1069 bits (553), Expect = 0.0
Identities = 572/579 (98%), Gaps = 3/579 (0%)
Strand = Plus / Plus
Query: 5 gaattcctatact-tgcaggtagatgagtggaaatttccacaggaaaaggctggcggaaa 63
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaatgcctataccatgcaggtagatgagtggaaatttccacaggaaaaggctggcggaaa 261
Query: 64 cctttatatgaggaagaaacgagccctgtagtgtgcaagggaagctgggaaacacactct 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 262 cctttatatgaggaagaaacgagccccgtagtgtgcaagggaagctgggaaacacactct 321
Query: 124 ttcagcagagagctatcagtattggcataaaaacagagatatgtaccaaggaaatggttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcagcagagagctatcagtattggcataaaaacagagatatgtaccaaggaaatggttg 381
Query: 184 aacaagatttaagcatcctcaattaaaagaaccagat--ttttttttacacaaaagaata 241
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 aacaagatttaagcatcctcaattaaaagaaccagatgtttttttttacacaaaagaata 441
Query: 242 aaaaatacacaataatttaaaggcagcagcatcttcaacggcttgtgtttggaaagctga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaaatacacaataatttaaaggcagcagcatcttcaacggcttgtgtttggaaagctga 501
Query: 302 acgttaacatgcagaaaaatgaaggtagatcctcatctctcacctcacacaaaaatcaac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acgttaacatgcagaaaaatgaaggtagatcctcatctctcacctcacacaaaaatcaac 561
Query: 362 cccaatcggatcaagttacagttcacctcctctcctcctctgtcttaccaaattcactgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccaatcggatcaagttacagttcacctcctctcctcctctgtcttaccaaattcactgc 621
Query: 422 tggggaggagcatcaggtgaatgcaactctatgtccagattgctttttgcgattattttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggggaggagcatcaggtgaatgcaactctatgtccagattgctttttgcgattattttt 681
Query: 482 atgtctgataaatttatctagaagctatgactcaactcatctaagatttgtttttgatga 541
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atgtctgataaatttatcgagaagctatgactcaactcatctaagatttgtttttgatga 741
Query: 542 tagctggatgttgcactggtaattttaaaagaaatctca 580
|||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tagctggatgttgcactggtaattttaaaagaaatctca 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_e13.g1 MSMg01no354_e13.g1 CHROMAT_FILE:
MSMg01no354_e13.g1 PHD_FILE: MSMg01no354_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:23 2005
(513 letters)
>mm_chr12_63505609_63506521
Length = 913
Score = 969 bits (501), Expect = 0.0
Identities = 510/513 (99%)
Strand = Plus / Minus
Query: 1 actgaaactattagagtcagcaatattgcaatgagttacacaaggtagagggattcaatg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 713 actgaaactattagagtcagtaatattgcaatgagttacacaaggtagagggattcaatg 654
Query: 61 gttttttacatcttcctactgacatattagctattaatatgtgctgtgagaaaaggttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gttttttacatcttcctactgacatattagctattaatatgtgctgtgagaaaaggttat 594
Query: 121 tgtcttttgttgcatatataatgatgaacccactagtctgaaactgattgctccagacac 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 tgtcttttgttgcatatataatgatgagcccactagtctgaaactgattgctccagacac 534
Query: 181 atgattgtacagacggtcttgattaaaattaatggttacaaacataaaacaagcaaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atgattgtacagacggtcttgattaaaattaatggttacaaacataaaacaagcaaacat 474
Query: 241 gaatttgagaaaagatttatagtgaagatacaggggcagataagagagggtatgagaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 473 gaatttgagaaaagatttatagtgaagatacaggggcagataagagagggtatgaaaaga 414
Query: 301 gtgatcagtgtatattgtatacaagtgtattttatattatgcatgtgtataactgacaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtgatcagtgtatattgtatacaagtgtattttatattatgcatgtgtataactgacaaa 354
Query: 361 gaataaatttaattaataacagggcagaaatgaacagcactgaaaatatatatttgagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaataaatttaattaataacagggcagaaatgaacagcactgaaaatatatatttgagga 294
Query: 421 actgtctttgctctagaggcagtagtacctgggagaatgaagcagaaaactgaggaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actgtctttgctctagaggcagtagtacctgggagaatgaagcagaaaactgaggaagac 234
Query: 481 taatgtatcatgcatgcactgctcaactttatt 513
|||||||||||||||||||||||||||||||||
Sbjct: 233 taatgtatcatgcatgcactgctcaactttatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
