BAC Information

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BAC

Clone NameMSMg01-354G23
Chromosome12 (Build37)
Map Location 54,130,832 - 54,131,225
singlet/doubletsinglet
Overlap geneAkap6
Upstream geneLOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354G23.T7 (MSMg01no354_g23.b1)MSMg01-354G23.TJ (MSMg01no354_g23.g1)
ACCAG465064AG465065
length789778
length of high quality
(start - end)		390 (49 - 438)394 (74 - 467)
definitionCHROMAT_FILE: MSMg01no354_g23.b1 PHD_FILE: MSMg01no354_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:35 2005CHROMAT_FILE: MSMg01no354_g23.g1 PHD_FILE: MSMg01no354_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCT
TTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATCCAAGACAGTCT
ATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAAC
TTTTTCTAGTGTTAGGAGCCTTTTTTTTCCTTTTCACATGTTATCAAGTG
GTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGA
AGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAA
ATAAGTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTAAGG
TCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAAAAGAAAANAGA
ANAGAANAAAGATCCATTAGCGGAGGTCTCTAGGAGAAGGAGCCTATACT
CATCACTAGATGAGCTCAAGGAGCCAGTTCCTAATAGTTCTGAATCAGAT
GAAAAGGCTATTANGGCCTGGAAAGGGGCTCTCCCCAAAGGTGAAGCCCT
GGACAACTAACAAAGATCGCCAGGGGACTCCGGAGCCATTCCCAATTTTT
GGGCCCGAAGAAAAAGGCGCCAACCGATTTTTTGTATTTCAAGAAACCGC
CCCCGGGGAAAAGTTATTTTTTAACACCCTTGCGGAAGGCAAAAGGCCTA
TCCCCCCAAAAAAAAGGTTAAAAAATGGTTCGGTTTGTG

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAATACGAGGAGCTGTCATTCTGCTG
GTCTGCGTGTGCATTAACTATTAATGGAGAAATATTTAAAAACCCACTTG
CAAAGGAAAAGCCCCATTTTTTTTCCATTTCTGCAGATCAAAGGTGACAT
TATTCTTGGGCTCGAGGAAGCTCTGTCACCTCCTCCCATCCTACACACTT
TATAGACTGAGTGATCTGGAAATCTGTCATGGATGGGAGAGCTGGACTCT
GCTGCGGCTCCTCTCCCAGCAGTCACCGCTGTCTTCACGGTCCTTTAAAG
GCGCACCCTCTCTGGACCGCCTGACCTCCACCAGTTTTATACTGCCTACA
AAGCACAGACCACAGAGCTCACCATAATCCTGTGTTGATGTATTAACCAA
AGGAAGTGCTAGTCTCANCACTCGNNTGCAGTGGTTGGAGTCTGGTGATT
ATTATTATTACTGAACAATAGTTACTTTCCGATGACGTGACTAAGTGTAT
GTCCTTGATGAGGCCCTTACCATGCCGCACCAAATTAAATCATAAGATTT
CCAGGAGCTAAAAGAACTCTGCCGCCTGGAAAAATCCCCAATTTAACCTC
CAAAATTTTTTACAGGAATTTTAGGGGAGTGTTTTAATTAAATTTTAAAT
TCTTAATTTGGGGAAATTAAATTACCCCCAGGTGCCCCTCTAGGAAAAAA
AAAGTTTCTGTTTTTTTCCCATATGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_g23.g1 MSMg01no354_g23.g1 CHROMAT_FILE:
MSMg01no354_g23.g1 PHD_FILE: MSMg01no354_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:35 2005
         (394 letters)



>mm_chr12_54130632_54131425
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatacgaggagctgtcattctgctggtctgcgtgtgcattaactattaatggagaaat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ataatacgaggagctgtcattctgctggtctgtgtgtgcattaactattaatggagaaat 260

                                                                       
Query: 61  atttaaaaacccacttgcaaaggaaaagccccattttttttccatttctgcagatcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaaaaacccacttgcaaaggaaaagccccattttttttccatttctgcagatcaaag 320

                                                                       
Query: 121 gtgacattattcttgggctcgaggaagctctgtcacctcctcccatcctacacactttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgacattattcttgggctcgaggaagctctgtcacctcctcccatcctacacactttat 380

                                                                       
Query: 181 agactgagtgatctggaaatctgtcatggatgggagagctggactctgctgcggctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agactgagtgatctggaaatctgtcatggatgggagagctggactctgctgcggctcctc 440

                                                                       
Query: 241 tcccagcagtcaccgctgtcttcacggtcctttaaaggcgcaccctctctggaccgcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tcccagcagtcaccgctgtcttcacggtcctttaaaggcgcaccctctctggaccacctg 500

                                                                       
Query: 301 acctccaccagttttatactgcctacaaagcacagaccacagagctcaccataatcctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctccaccagttttatactgcctacaaagcacagaccacagagctcaccataatcctgt 560

                                             
Query: 361 gttgatgtattaaccaaaggaagtgctagtctca 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgatgtattaaccaaaggaagtgctagtctca 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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