BAC Information

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BAC

Clone NameMSMg01-354L23
Chromosome12 (Build37)
Map Location 92,364,841 - 92,365,238
singlet/doubletsinglet
Overlap gene4930534B04Rik
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 5430427M07Rik
Downstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L23.T7 (MSMg01no354_l23.b1)MSMg01-354L23.TJ (MSMg01no354_l23.g1)
ACCAG465300AG465301
length755781
length of high quality
(start - end)		531 (50 - 580)415 (83 - 497)
definitionCHROMAT_FILE: MSMg01no354_l23.b1 PHD_FILE: MSMg01no354_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:59 2005CHROMAT_FILE: MSMg01no354_l23.g1 PHD_FILE: MSMg01no354_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTAAGATTGGATCCATTTCATGGGAACATTTATTTAAACA
TGGCTCATTTAGTGTATTTATTAAAGACCAAACTTGCAGCAGACATTGAG
CTGGGCAAGAAGTATACATTGTGATTTCATAGATCTCACTCCCAATTTCC
TAAGATCTATAGTCCAACTCTAGACAGAGTACATAGTTGGAGCTCCTAGG
TTAGGGCTATAACTCATTGGTAGAGTGCTTGCCTAGTATACTCAAGGCCT
GGTCTTGGTCCCTTGCACCGTATAAACTGGTACATACCTGAACTCAACAC
ACTCAAGAGGTGTAGACAGTAAGATCACAAGTTTAAGGACATCCTTGGCT
ATCTAGCAAGTTCAAGATTAGCCTGGACTGAATGGGATGCTGTCTTGACA
AACCAAAATGGCAAAAGCAGCAAACTGTAGTTGGAACTTTGTTTTGTCAT
ACTAAGTGTGGGCGCCAGGGTGCACGACATACAGTAACTGTAAGCCTGAG
GGTGTGATTGCCAGGCTGAAAAGCATAGTAGTGTATGCAGGGTAAAACAC
AGCATGCANGAGGGGATGTTTGAAATGACCTAACCAGATAAATAGGCTGA
AAAGCCAGCAGGCTAGCATTTGAATCAAGTGAGCTTGCCTGGATACAAGG
GGGGTGACTTTAATATTGGGTCCCCGGGGCATGTTTTATGCTTTTAAGAG
GAGAA

NNNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGATGACAGCAGATGCTGTCGAGGATGTGGAGAA
AGAGGAACACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGGCATAGTACTACCAG
AGGATTCCGCAATATCTCTTCTGGGCATATATCCAGAAGATGTTCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AAAAAATGTGGTACATTTACACAATAGAGTACTACTCAGCTATTAAAAGA
ATGAATTTATGAAATTCCTAAGCAAATGGTTGGACCTGGAAGGCATCATC
CTGAATGAGGAACCCATCCCCAAAGAACTCAAAGGATTGGAGGTCCCGGA
AAATGGAATTAACCCCCAAAACTTTTTATCCGGGTTATTGAATCAAATTG
GCGAAAACCTTGAACTGGAAAAAAAAGAAAACCAAAGGGGGAGGCTTTTC
CCTTCTTAAAATGGAGAAAAACCCCCCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l23.b1 MSMg01no354_l23.b1 CHROMAT_FILE:
MSMg01no354_l23.b1 PHD_FILE: MSMg01no354_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:59 2005
         (531 letters)



>mm_chr12_92364841_92365771
          Length = 931

 Score =  687 bits (355), Expect = 0.0
 Identities = 388/399 (97%), Gaps = 2/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaagattggatccatttcatgggaacatttatttaaacatggctcattta-g 63
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 398 gaattcaccaagattggatccatttcatgggaacatttatttaaacatggctca-ttagg 340

                                                                       
Query: 64  tgtatttattaaagaccaaacttgcagcagacattgagctgggcaagaagtatacattgt 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtttttattaaagaccaaacttgcagcagacattgagctgggcaagaagtatacattgt 280

                                                                       
Query: 124 gatttcatagatctcactcccaatttcctaagatctatagtccaactctagacagagtac 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 279 gatttcatagatctcactcccaatttcctaagatctatagtccaactctagatagagtac 220

                                                                       
Query: 184 atagttggagctcctaggttagggctataactcattggtagagtgcttgcctagtatact 243
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 219 atagttggagctcctcggttagggctataactcattggtagagtgcttgccgagtatact 160

                                                                       
Query: 244 caaggcctggtcttggtcccttgcaccgtataaactggtacatacctgaactcaacacac 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 caaggcctggtcttggtcacttgcaccgtataaactggtacatacctgaactcaacacac 100

                                                                       
Query: 304 tcaagaggtgtagacagtaagatcacaagtttaaggacatccttggctatctagcaagtt 363
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tgaagaggtgtagacaggaagatcacaagtttaaggacatccttggctatctagcaagtt 40

                                                  
Query: 364 caagattagcctggactgaatgggatgctgtcttgacaa 402
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 39  caagattagcctggactgcatgggatgctgtcttgacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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