BAC Information

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BAC

Clone NameMSMg01-355G03
Chromosome12 (Build37)
Map Location 60,901,020 - 60,901,345
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355G03.T7 (MSMg01no355_g03.b1)MSMg01-355G03.TJ (MSMg01no355_g03.g1)
ACCAG465784AG465785
length773803
length of high quality
(start - end)
480 (42 - 521)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no355_g03.b1 PHD_FILE: MSMg01no355_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:49 2005CHROMAT_FILE: MSMg01no355_g03.g1 PHD_FILE: MSMg01no355_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCTTAAGTTCTTTATATATATTGGATATTAGTCCCCTATC
CGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTGTTCC
ATTTCTAAGCGCCCAGTCACAGCCTGCTGCTGACCAGGCATTTCCTTAGT
GGTCCTCTAGGGAAAGCATTGGCCCCATAACCATTTAATTCTCTCCAATC
CTCATACTTTCTCAATTGATGTGTTTACCTCTTTTAGTTACTTTCTGGAT
AAAATACAAATGATTTAAAACAATTGATTTGTGAACCTGAAATGGACAAC
GTCATGAGTTACTGGAATCTAAGTATTTAACTAATGCCTTCTAATATATT
GTTAACTGGCTATGCAGAAACAACAGGTTAGCTAAGTTCAAATTCTAGCA
ATTTAAAGTTTAAGACTAAATAAACTACAGAGTGTTGATTATGTACAATA
CAGACATGTTTTAAGCCAGAAATATATCTAGGCTATCTAGTATCTATGAT
TTTTAATTCCATAACTTGCCTGAGAGATTTTTTTTAAATACATTTCTACC
CTCCAACTTACCCTTCTCATATAAGCCTTCTGGTGTCCATTTTTCTCAAT
TTCAAATTTTCCCATATAACGTTTCTTTTTATTCAACCTTTTAAATTACT
TCCCCCATTTTTTCACCACTTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAGTACTGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAATTTCCACCTCACACCAGTCAGAATGGCTACGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTTGTGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTATAACCACTCTGGAAATCA
GTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGA
AAAACCTCTCCTGGGCATATATCCAGAATATGTTCCATCTGGTAAGAAGG
ACACATGCTCCAGTATGTTCATAGCAGTCTTATTTATAATAGCCAGAAGC
TGGATAGAATCCAGATGCCCCTCAACAGAGTAATGGATACAGAAATTGTG
GTACTATTTAACTACGGAGTACTACTCACCTATTAAAAAGAATGAATTTA
TTAATTTTCCAGGGCAATGCAATGGACCTGGTAGGGAATTATCCTGGAGT
CGAGTTATCTCCACCAAATATTAACCTCTCATAAACTGTACCCTCTTGAT
AAGTCGCTTTTTATTCTCTCTACCCTCCCCTCCTTCTTTTTCATCCGTTC
TTTATTTTTTTTTTTTCTCTTTAATTCCCATCTTATAGAACATACTCTGC
TGAGGATTACCCATCCCCCTTTTTTATAACTTGTGATTTCTACTCTTTCT
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_g03.b1 MSMg01no355_g03.b1 CHROMAT_FILE:
MSMg01no355_g03.b1 PHD_FILE: MSMg01no355_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:49 2005
         (480 letters)



>mm_chr12_60900663_60901542
          Length = 880

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 155 gttccatttctaagcgcccagtcacagcctgctgctgaccaggcatttccttagtggtcc 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttccatttctaagcgcccagtcacagcctgctgctgaccaggcatttccttagtggtcc 624

                                                                       
Query: 215 tctagggaaagcattggccccataaccatttaattctctccaatcctcatactttctcaa 274
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctagggaaagcaatggccccataaccatttaattctctccaatcctcatactttctcaa 564

                                                                       
Query: 275 ttgatgtgtttacctcttttagttactttctggataaaatacaaatgatttaaaacaatt 334
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttggtgtgtttatctcttttagttactttctggataaaatacaaatgatttaaaacaatt 504

                                                                       
Query: 335 gatttgtgaacctgaaatggacaacgtcatgagttactggaatctaagtatttaactaat 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatttgtgaacctgaaatggacaacgtcatgagttactggaatctaagtatttaactaat 444

                                                                       
Query: 395 gccttctaatatattgttaactggctatgcagaaacaacaggttagctaagttcaaattc 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccttctaatatattgttaactggctatgcagaaacaacaggttagctaagttcaaattc 384

                                     
Query: 455 tagcaatttaaagtttaagactaaat 480
           ||| |||||||| |||||||||||||
Sbjct: 383 tagaaatttaaattttaagactaaat 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)