BAC Information

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BAC

Clone NameMSMg01-355G12
Chromosome12 (Build37)
Map Location 121,056,686 - 121,057,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355G12.T7 (MSMg01no355_g12.b1)MSMg01-355G12.TJ (MSMg01no355_g12.g1)
ACCAG465802AG465803
length753771
length of high quality
(start - end)
600 (44 - 643)513 (74 - 586)
definitionCHROMAT_FILE: MSMg01no355_g12.b1 PHD_FILE: MSMg01no355_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:51 2005CHROMAT_FILE: MSMg01no355_g12.g1 PHD_FILE: MSMg01no355_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCACATTTGACCCCATTTTTAAATGGGGTTCTTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATTTATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAATATACTTTCCCAATCTGTTGGTGGCCTTTTT
GTTTTACTGATGGTGCCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAG
GTCCCCTTTGTCAATTCTCGATCTTAAAGCATAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAATGTCTCTGGTTTTATGTGGAACTCCTTGATCCA
CTTATTTGACCTTAGTAAAAGGAGATAGGAATGGATCAATTCGCATTCTT
CTACATGATAACCACCAGTTGTGCAAGCACCATTTGTTGAAAATGCTGTC
TTTTTTCCACTGGATGGATATAGCTCCCTTGTTGGAGATCAAGTGACCAT
AGATGTGTTGGTTCATTTCTGGGTCTTCAATTCTATTCCACTGGTCTACT
TTTCTTTCAGTATACCAGTACCATGCCATTTTTATCACAATTGCTCTGTA
GTAAAGCTTTATGTCCGGCATGGCGATTCCAGCAGAGGGTCTTTTATCCT
TGAGAAGAGTTTTTGCTATCCTAAGTTTTTTGTCATTCCAGATGAATGTG
CCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACATCAACGGTAGATAAAGAAAATA
CCTTGCTGGCTTGCCTAAACACTAGTTTGATAGCCTCTCTTCCTAGATGA
CCCTAGCTTGTGCCTAGTTGAAAAAATATCCATTAAATACACAACTTTTA
CCTGATTATTTGAACTTATAGTTTCTCCATCATTTCTAACCATTCTCCTT
GCTCTCGTTCCTACATTCTGGGCAGTGCTCTCCCATGAGAAGTGTTTAAA
TTGTATTCCAAGTAGTCCACTGGCTAAGCAAGAAAAGAACACACAAATTA
CTAATAGTTTATTATGCAAAGTTTGAAGGAAAAGCAAGGTGTAAATTATT
TTAAGGAACTAAGCAACAATCAGGGAAGTGTAAGCAAGTATTAGTAGAAA
ACATGAGACATGGCCACAAAATATTTCTTTTGCTCTTAAGGGGTCTAGTA
TCCAAGAACCTTTGTCTCAAAATATCTATTTTGACAGTGAAAGACAAGAT
ATAATTTGTTCCTTTGAGATACAAATTCTACTCTTAGATTTTCAAACTAC
TTATTTCCAAACACACACACCAGTGAAGCAGCAGATACCTTATTTCTTTA
TTCTTCCACTTAATTACTGATTATACTAGATCTCCTTTCTTCTCCAATTA
GTGACAATTTGGAGTTGCTGCTTTTTCAAACCCTTTAAAAATTGTGGACT
GGCTCAAAAATCCCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_g12.g1 MSMg01no355_g12.g1 CHROMAT_FILE:
MSMg01no355_g12.g1 PHD_FILE: MSMg01no355_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:51 2005
         (513 letters)



>mm_chr12_121056377_121057289
          Length = 913

 Score =  992 bits (513), Expect = 0.0
 Identities = 513/513 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacatcaacggtagataaagaaaataccttgctggcttgcctaaacactagtttgatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ccacatcaacggtagataaagaaaataccttgctggcttgcctaaacactagtttgatag 763

                                                                       
Query: 61  cctctcttcctagatgaccctagcttgtgcctagttgaaaaaatatccattaaatacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cctctcttcctagatgaccctagcttgtgcctagttgaaaaaatatccattaaatacaca 703

                                                                       
Query: 121 acttttacctgattatttgaacttatagtttctccatcatttctaaccattctccttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acttttacctgattatttgaacttatagtttctccatcatttctaaccattctccttgct 643

                                                                       
Query: 181 ctcgttcctacattctgggcagtgctctcccatgagaagtgtttaaattgtattccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctcgttcctacattctgggcagtgctctcccatgagaagtgtttaaattgtattccaagt 583

                                                                       
Query: 241 agtccactggctaagcaagaaaagaacacacaaattactaatagtttattatgcaaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agtccactggctaagcaagaaaagaacacacaaattactaatagtttattatgcaaagtt 523

                                                                       
Query: 301 tgaaggaaaagcaaggtgtaaattattttaaggaactaagcaacaatcagggaagtgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaaggaaaagcaaggtgtaaattattttaaggaactaagcaacaatcagggaagtgtaa 463

                                                                       
Query: 361 gcaagtattagtagaaaacatgagacatggccacaaaatatttcttttgctcttaagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gcaagtattagtagaaaacatgagacatggccacaaaatatttcttttgctcttaagggg 403

                                                                       
Query: 421 tctagtatccaagaacctttgtctcaaaatatctattttgacagtgaaagacaagatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctagtatccaagaacctttgtctcaaaatatctattttgacagtgaaagacaagatata 343

                                            
Query: 481 atttgttcctttgagatacaaattctactctta 513
           |||||||||||||||||||||||||||||||||
Sbjct: 342 atttgttcctttgagatacaaattctactctta 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)