BAC Information

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BAC

Clone NameMSMg01-356A22
Chromosome12 (Build37)
Map Location 101,498,925 - 101,499,285
singlet/doubletsinglet
Overlap genenone
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1
Downstream geneTtc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356A22.T7 (MSMg01no356_a22.b1)MSMg01-356A22.TJ (MSMg01no356_a22.g1)
ACCAG466294AG466295
length890803
length of high quality
(start - end)		228 (38 - 265)365 (68 - 432)
definitionCHROMAT_FILE: MSMg01no356_a22.b1 PHD_FILE: MSMg01no356_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:40 2005CHROMAT_FILE: MSMg01no356_a22.g1 PHD_FILE: MSMg01no356_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATTCTACA
CTGTCTTTCTTTGAAAAAATAATGTAGCCCTTCAAATAGTACCACACAGT
TATCCTTTAATTTGTGTGGCTTCTACTAAGAATTTTGCTACCGTTTTCAT
GGTTCTTGAGAACATAATGTTCCTTTTTTTTTCTCTAGCTGGTTTCTAAA
TTTTTTCTTTGTGTTTTGTATCGGGCACTTTGTGCACAGTGTATATGTGG
GGGGTGTGTGTGCTTCTTTCTTCTTCCTTCCTTTATTTTCCCCCCTCCTC
CNCTTTTCCCCCCCTTTTTTTTTTTTTCNCCCCTNCCCCTTTCTCTCCTC
TCTGCTTTTTTCTCCTTTCCCCCATTTACTCGCACTTTTTTACAATTTTC
TCTATTTTCTTTCACCCCCTTCCTTTTCCCTTTAATTCCCCGTTCTCCTT
TCCTATTTTTCGCGTGCCTCATTTCCCCTGTATTTCACCCCTACTCTTTG
CCTATTCTAATTCTTTCTCCTCTTCTCCATATATCCTCTTCTTGCTTCTT
TCACTCCTTACCAACCTGCCCACGTATCTAGTAAATTATTTTTCCTCCGC
GCCCATACCTTCCTTTTTCTTTCTTTCTTTTCTCTCATTCTTCGTCTCCC
TCCTTCTCCTTTCTCGATGCTGCTTCATCTTTTTTTTATCTAATCGTTCC
TCTCTCCCATTCTCCTCCATTCCACTCTACTGCATAAGTTCCCGTTCTTT
ATCATCTCTTCCTATTCTTATATTCTCTCCTAGTATATCTCCCCATTATT
TTCCCTTCTTTTCTTTTCCCCTTTTCTTATCCTTTTTCCCCTTCTCTTTT
TCCCCCCCCTCTTTCCCCCTTCTTTTCTCATTCCTTCTTC

GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGGGTTTGCGGGTGGGTGACAGATCATAAGGG
ATGAATGGTTATTCAGAGGGAACTGGTTGATGAATGGTACTAATAGTCAT
ATTAGGATGAAGTACTCAGATAGGCATCAGAAATCCTTCTTTTAGGTTTC
AACTCTTCCTCCTATCAGCTGAGACTAATAGAGAGCCCCTTCCCAACTCT
GGAGCTTGACAGCCATCGGTGTACTGTGAGATGATGAGCCTGCCTAGATG
ACCTTTTTGATTGCTCTAGGTTGGACCAGCTCTAGCTATGGAAATAGTGC
ATGGCAAAGATGATTTGGGTCTAGACAATTCGGCTTTAAAATGTATGTTT
TGTAACTGCTTTCTCACTACGGGGACCTCATGAAAAGATAGGTTCTATGG
GCAGCTAGGGCCTCCTTGTCCTCCAATGTGAACCTTCCCTCCCTTCCTCC
TTAATTTCCATCATATGGAAGGAAGGGCTCCTGAACCTTGGGAATCCTGT
TCTAAAAACCCCCCGAGCTTATTGCGGGTTTCTTGTTTTCCCCAACCCCA
TAGGGGAATACTGTGGTACTTTCTAAAAAACTTCCCGGTGTAAAAAGCCT
CCTTATCCTCTTCTGTGGTCTTTTCCTGGTTCTCCCCTCCCCACCCCCTT
ACTGGTGAAAACCCTGTCTCCTCCCCCCCGCTCCAGAGGGTTCATTTGCC
CTCTTTTTTGTGCCCTTCTCCTCCCCAAGCTGACAATCTTTACGTGTTTC
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_a22.g1 MSMg01no356_a22.g1 CHROMAT_FILE:
MSMg01no356_a22.g1 PHD_FILE: MSMg01no356_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:40 2005
         (365 letters)



>mm_chr12_101498725_101499489
          Length = 765

 Score =  629 bits (325), Expect = 0.0
 Identities = 352/361 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgggtttgcgggtgggtgacagatcataagggatgaatggttattcagagggaactggt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgggttttcgggtgggtgacagatcataagggatgaatggttattcagagggaactggt 502

                                                                       
Query: 61  tgatgaatggtactaatagtcatattaggatgaagtactcagataggcatcagaaatcct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ttatgaatggtactaatagtcatattaggatgaagtactcagataggcaccagaaatcct 442

                                                                       
Query: 121 tcttttaggtttcaactcttcctcctatcagctgagactaatagagagccccttcccaac 180
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 441 tcttttaggtttcaactcttcctcctatcagctgagactattggagagccccttcccaac 382

                                                                       
Query: 181 tctggagcttgacagccatcggtgtactgtgagatgatgagcctgcctagatgacctttt 240
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggagcttggcagccatcgttgtactgtgagatgatgagcctgcctagatgacctttt 322

                                                                       
Query: 241 tgattgctctaggttggaccagctctagctatggaaatagtgcatggcaaagatgatttg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatttctctaggttggaccagctctagctatggaaatagtgcatggcaaagatgatttg 262

                                                                       
Query: 301 ggtctagacaattcggctttaaaatgtatgttttgtaactgctttctcactacggggacc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctagacaattcggcttcaaaatgtatgttttgtaactgctttctcactacggggacc 202

            
Query: 361 t 361
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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