BAC Information

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BAC

Clone NameMSMg01-356D22
Chromosome12 (Build37)
Map Location 105,714,740 - 105,737,614
singlet/doubletdoublet
Overlap genenone
Upstream gene8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356D22.T7 (MSMg01no356_d22.b1)MSMg01-356D22.TJ (MSMg01no356_d22.g1)
ACCAG466435AG466436
length767831
length of high quality
(start - end)		545 (60 - 604)139 (77 - 215)
definitionCHROMAT_FILE: MSMg01no356_d22.b1 PHD_FILE: MSMg01no356_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:55 2005CHROMAT_FILE: MSMg01no356_d22.g1 PHD_FILE: MSMg01no356_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,737,247 - 105,737,614)(105,714,740 - 105,714,875)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAG
TCCGTGCATAGAGAAAGGAAATTAATATATGCTCCTAGCAGCTCACACCT
TTTACCAGGGAATGACTCTCCCTCCTGGTTCTCCCTGGATTCCTAGAGGC
TTGTGTATGTTGAAAGTGCTCTGCAGAGGTCAAGTGTGAGACAGTCGTGG
CTACCTCTAGGCAAAAATGGTCAATGAGGAGCTAAGGAGATGATTCAGTC
AGTTATTTCCATACAAGCTCAGGACCTGTATTAGGTATCTCCAGCATCTG
CATAACAGACAGACAGGATAGTATGCGCCTGCATCACTGGCACTGGTCGG
ATGGAGAAAGAGGGTTCCTGGGCCTCACTGGCCAGCCTAGCTGAATCATG
AGAGATCCCGTCTCAAAGAATAAAGTGGGGAGTAATAGAGGGAGACCCCC
AATATCAAGCTCAGGCTTCTACATAACCTATACATGCAAGTGCACACACA
GTGCACACACACACACACACCCTGTGCTCTCTGTGAGTGGACTGACACCC
TGATGGAGCCTGAGTCTTCATGCTGATAATGTCTCCCTGGTCCTGACTCC
CANGGCAGCTGCCTTACTCCTCTGAGCAGAAGCAGGAAGTGCAGACCATC
TTGGCTGATGAGAAAAAGGTGGTTGTTGCTTTTACCAAATTGATTTCTAT
GTTAGCCCCCTATTTCTGGACCAGGAAGGGGGGTTGTTTTTGGAAACAAC
CCCCTGCCCCCCCACCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTGCTTTTCTAATTTAAAACCT
AGAGCCCAAGTTTGGAGTGCTCATCTGGCTATCTTTCAGAGGGCTGTCTC
CCCATTATCCTTATATCCCAGCCTCGTCGCTTTTCTCTTCCCTTGGGGAT
GGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNNNNTNTTT
NNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTNNTTTTTNNTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTNTTTNTTTTTTTTNTTTNTTTTTTTTTTTTTT
TTTTTTTTTTNTTTNNTTTTTTNNNNTTTTTTTTTTTTTTTTTTTNNTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTNTNTTTTTTTTTNTTTTTTTTT
TTTTTTNTNNTTNTTTTTTTTTTTTTTNNTNNTTNNNTTTTTTTTTTTTT
TTNTTTTNTTTTNTTTTTTTTTTTTTTTTTNNNNNTTNNTTTTTTTTTTT
TTTTTTTTTNNNTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNNN
TTTTTTTTTTTTNNNNTTTTNNTTTTTTTTTNNTTTTTNTTTTTTTTTTT
TTTTTTNNNNNTTTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_d22.b1 MSMg01no356_d22.b1 CHROMAT_FILE:
MSMg01no356_d22.b1 PHD_FILE: MSMg01no356_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:55 2005
         (545 letters)



>mm_chr12_105737247_105738191
          Length = 945

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaaaggaaattaatatatgctcctagcagctcacaccttttaccagggaatgactct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 368 agagaaaggaaattaatatatgctcctagcagctcacaccttttaccagggaataactct 309

                                                                       
Query: 61  ccctcctggttctccctggattcctagaggcttgtgtatgttgaaagtgctctgcagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ccctcctggttctccctggattcctagaggcttgtgtatgttgaaagtgctctgcagagg 249

                                                                       
Query: 121 tcaagtgtgagacagtcgtggctacctctaggcaaaaatggtcaatgaggagctaaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcaagtgtgagacagtcgtggctacctctaggcaaaaatggtcaatgaggagctaaggag 189

                                                                       
Query: 181 atgattcagtcagttatttccatacaagctcaggacctgtattaggtatctccagcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atgattcagtcagttatttccatacaagctcaggacctgtattaggtatctccagcatct 129

                                                                       
Query: 241 gcataacagacagacaggatagtatgcgcctgcatcactggcactggtcggatggagaaa 300
           ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 128 gcataacagacagacagaatagtatgcacctgcgtcactggcactggtcggatggagaca 69

                                                                       
Query: 301 gagggttcctgggcctcactggccagcctagctgaatcatgagagatcccgtctcaaaga 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gagggttcctgggcctcattggccagcctagctgaatcatgagagatcccgtctcaaaga 9

                   
Query: 361 ataaagtg 368
           ||||||||
Sbjct: 8   ataaagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_d22.g1 MSMg01no356_d22.g1 CHROMAT_FILE:
MSMg01no356_d22.g1 PHD_FILE: MSMg01no356_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:55 2005
         (139 letters)



>mm_chr12_105714540_105715078
          Length = 539

 Score =  248 bits (128), Expect = 1e-70
 Identities = 134/136 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgcttttctaatttaaaacctagagcccaagtttggagtgctcatctggctatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgcttttctaatttaaaacctagagcccaagtttggagtgctcatctggctatcttt 260

                                                                       
Query: 61  cagagggctgtctccccattatccttatatcccagcctcgtcgcttttctcttcccttgg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cagagggctgtctccccattatccttatatcccagcctcatcgcttttctcttcccttgg 320

                           
Query: 121 ggatggggggggggtg 136
           ||||||||| ||||||
Sbjct: 321 ggatgggggtggggtg 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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